Modeling evolution in paleontological time-series (alternate paramaterization)

Documentation for package ‘paleoTSalt’ version 0.1-1

paleoTSalt-package	Fitting models of evolution to paleontological time-series of phenotypic data
add.OU.curves	Adds curves to an existing plot indicating best-fit OU model
dorsal.spines	Stickleback data from Bell et al. (2006)
fit3models.alt	Do model fits for three evolutionary models (alternate parameterization)
logL.alt.GRW	Log-likelihoods for evolutionary models (alternate parameterization)
logL.alt.OU	Log-likelihoods for evolutionary models (alternate parameterization)
logL.alt.Stasis	Log-likelihoods for evolutionary models (alternate parameterization)
logL.alt.URW	Log-likelihoods for evolutionary models (alternate parameterization)
opt.alt.GRW	Optimize evolutionary models (alternate parameterization)
opt.alt.OU	Optimize evolutionary models (alternate parameterization)
opt.alt.Stasis	Optimize evolutionary models (alternate parameterization)
opt.alt.URW	Optimize evolutionary models (alternate parameterization)
ou.M	Simulate evolutionary time-series
ou.V	Simulate evolutionary time-series
paleoTSalt	Fitting models of evolution to paleontological time-series of phenotypic data
pelvic.score	Stickleback data from Bell et al. (2006)
pterygiophores	Stickleback data from Bell et al. (2006)
sim.OU	Simulate evolutionary time-series