as.character.phyDat | Conversion amoung Sequence Formats |
as.data.frame.phyDat | Conversion amoung Sequence Formats |
as.phyDat.DNAbin | Conversion amoung Sequence Formats |
dfactorial | Arithmetic Operators |
distanceHadamard | Distance Hadamard |
fhm | Hadamard Matrices and Fast Hadamard Multiplication |
fitch | Parsimony tree. |
h2st | Hadamard Matrices and Fast Hadamard Multiplication |
h4st | Hadamard Matrices and Fast Hadamard Multiplication |
hadamard | Hadamard Matrices and Fast Hadamard Multiplication |
Laurasiatherian | Laurasiatherian data (AWCMEE) |
ldfactorial | Arithmetic Operators |
logLik.pml | Likelihood of a tree. |
NJ | Neighbor-Joining |
optim.parsimony | Parsimony tree. |
optim.pml | Likelihood of a tree. |
parsimony | Parsimony tree. |
phyDat | Conversion amoung Sequence Formats |
pml | Likelihood of a tree. |
predict.pml | Likelihood of a tree. |
print.phyDat | Conversion amoung Sequence Formats |
print.pml | Likelihood of a tree. |
print.summary.pml | Likelihood of a tree. |
print.treedist | Distances between trees |
sankoff | Parsimony tree. |
seq2split | Hadamard Matrices and Fast Hadamard Multiplication |
split2seq | Hadamard Matrices and Fast Hadamard Multiplication |
summary.pml | Likelihood of a tree. |
treedist | Distances between trees |
UNJ | Neighbor-Joining |
upgma | UPGMA |
vcov.pml | Likelihood of a tree. |
write.nexus.splits | Hadamard Matrices and Fast Hadamard Multiplication |