Processing and Simulating Genotype Data for Trio Logic Regression


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Documentation for package ‘trio’ version 1.0.2

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findLDblocks Identifying LD blocks
freq.hap Haplotype frequencies
getLD Computation of LD Measures
mat Computation of LD Measures
plot.getLD Plotting a getLD Object
plot.LDblocks Plotting a LDblock Object
print.LDblock Identifying LD blocks
simuBkMap Haplotype frequencies for simulation
step3way A named list used internally for simulation
trio Generate Trio Data Format Suitable for Trio Logic Regression
trio.check Check Case-Parent Trio Data for Mendelian Errors
trio.gen.err Genotype data for trios with Mendelian errors
trio.gen1 Genotype data for trios
trio.gen2 Genotype data for trios with missing genotypes
trio.ped.err Genotype data for pedigrees in the format of a linkage file, with Mendelian errors
trio.ped1 Genotype data for pedigrees in the format of a linkage file
trio.ped2 Genotype data for pedigrees in the format of a linkage file, with missing genotypes
trio.sim Simulate Case-Parent Trios with Population Disease Risk Dependent on SNP-SNP Interaction