findLDblocks |
Identifying LD blocks |
freq.hap |
Haplotype frequencies |
getLD |
Computation of LD Measures |
mat |
Computation of LD Measures |
plot.getLD |
Plotting a getLD Object |
plot.LDblocks |
Plotting a LDblock Object |
print.LDblock |
Identifying LD blocks |
simuBkMap |
Haplotype frequencies for simulation |
step3way |
A named list used internally for simulation |
trio |
Generate Trio Data Format Suitable for Trio Logic Regression |
trio.check |
Check Case-Parent Trio Data for Mendelian Errors |
trio.gen.err |
Genotype data for trios with Mendelian errors |
trio.gen1 |
Genotype data for trios |
trio.gen2 |
Genotype data for trios with missing genotypes |
trio.ped.err |
Genotype data for pedigrees in the format of a linkage file, with
Mendelian errors |
trio.ped1 |
Genotype data for pedigrees in the format of a linkage file |
trio.ped2 |
Genotype data for pedigrees in the format of a linkage file, with
missing genotypes |
trio.sim |
Simulate Case-Parent Trios with Population Disease Risk Dependent
on SNP-SNP Interaction |