R code for Stock Synthesis

Documentation for package ‘r4ss’ version 1.05

r4ss-package	R tools for Stock Synthesis
DoProjectPlots	Make plots from Rebuilder program
movepars	A function to visual parameterization of movement in Stock Synthesis
r4ss	R tools for Stock Synthesis
sel.line	a function for drawing selecitivity curves
selfit	A function to visual parameterization of double normal and double logistic selectivity in Stock Synthesis
SSv3_FishGraph	A function for converting Stock Synthesis output to the format used by FishGraph
SSv3_output	A function to create a list object for the output from Stock Synthesis
SSv3_plotpars	Plot distributions of priors, posteriors, and estimates.
SSv3_plots	function to plot many quantities related to output from Stock Synthesis
SS_changepars	Change parameters in the control file.
SS_fitbiasramp	Estimate bias adjustment for recruitment deviates
SS_parlines	Get parameter lines from Stock Synthesis control file
SS_profile	Run a likelihood profile in Stock Synthesis.
SS_recdevs	Insert a vector of recruitment deviations into the control file.
SS_splitdat	Split apart bootstrap data to make input file.
update_r4ss_files	Updates r4ss files to newest versions on web.