Score Tests for Association of Traits with Haplotypes when Linkage Phase is Ambiguous.


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allele.recode Recode allele values to integer ranks
banner Print a nice banner
gcode Numeric Code for Genotypes
geno.recode Recode Genotypes
Ginv Compute Generalized Inverse of Input Matrix
haplo.em EM Computation of Haplotype Probabilities
haplo.enum Enumerate all possible pairs of haplotypes that are consistent with a set of un-phased multilocus markers
haplo.hash Integer Rank Codes for Haplotypes
haplo.score Score Statistics for Association of Traits with Haplotypes
haplo.score.glm Compute haplotype score statistics for GLM
haplo.score.podds Compute Haplotype Score Statistics for Ordinal Traits with Proportional Odds Model
hla.demo HLA Gene Variantion and Serologic Response to Measles Vaccination
locator.haplo Find Location from Mouse Clicks and Print Haplotypes on Plot
plot.haplo.score Plot Haplotype Frequencies versus Haplotype Score Statistics
print.haplo.score Print a haplo.score object
ungcode Uncode Numeric Genotype Codes to Alleles