plotmeltingcurve {phyloarray}R Documentation

Plot melting curve

Description

Make a plot of a melting curve.

Usage

  plotmeltingcurve(datalist, dye="R", probe=NULL)

Arguments

datalist An object of type phyloarray
dye The dye of which the background should be plotted, i.e. "R" or "G".
probe The name of the probe ('Probename') which should be plotted.

Details

At present date, only the signal/background ratio is calculated and plotted. In the future, other methods may be included.

The probe-ID's to be plotted are taken from the list of probes. If more than one probe has the same 'Probename', all the probes are plotted in the figure, using different point character (from type 1 to ...). Each next column, i.e. ID of probe of the same 'Probename' (match, mismatch, ...) is plotted using a different color, going from color 1 to ... See par and plot for more information about characters and colors.

Value

Note

Author(s)

Kurt Sys (kurt.sys@advalvas.be)

References

See Also

Scandataraw Phylodata

plot lines par

Examples

  # load data this-is-escaped-codenormal-bracket36bracket-normal, i.e. this-is-escaped-codenormal-bracket37bracket-normal
  data(Phylodata)

  # for calculation of histogram cutoffs for good/bad spots
  # scans <- histcutoffs(scans)
  #
  # if background calculation is necessary
  # scans <- calcbackgroud(scans)

  plotmeltingcurve(scans, probe="Bacteria1")

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