Genetic analysis package


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aldh2 ALDH2 markers and Alcoholism
apoeapoc APOE/APOC1 markers and Schizophrenia
bt Bradley-Terry model for contingency table
chow.test Chow's test for heterogeneity in two regressions
fbsize Sample size for family-based linkage and association design
fsnps A case-control data involving four SNPs with missing genotype
gc.em Gene counting for haplotype analysis
gcontrol genomic control
genecounting Gene counting for haplotype analysis
gif Kinship coefficient and genetic index of familiality
hap Haplotype reconstruction
hap.em Gene counting for haplotype analysis
hap.score Score Statistics for Association of Traits with Haplotypes
hla HLA markers and Schizophrenia
htr Haplotype trend regression
hwe Hardy-Weinberg equlibrium test
hwe.hardy Hardy-Weinberg equlibrium test using MCMC
kbyl LD statistics for two multiallelic loci
kin.morgan kinship matrix for simple pedigree
makeped A function to prepare pedigrees in post-MAKEPED format
mia multiple imputation analysis for hap
mtdt Transmission/disequilibrium test of a multiallelic marker
muvar Means and variances under 1- and 2- locus (biallelic) QTL model
pbsize Power for population-based association design
pfc Probability of familial clustering of disease
pfc.sim Probability of familial clustering of disease
pgc Preparing weight for GENECOUNTING
s2k Statistics for 2 by K table
tbyt LD statistics for two SNPs
whscore Whittemore-Halpern scores for allele-sharing