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| abf1 | Data for a 18-array affymetrix experiment |
| adjPval | Generate FDR adjusted P values for F test result. |
| arrayview | View the layout of input data |
| consensus | Build consensus tree out of bootstrap cluster result |
| createData | Calculate and create a data object for Micro Array experiment |
| dbldyeswap | Data for a double dye-swap experiment |
| dyeswapfilter | Gene filter for dye-swap experiment |
| fitmaanova | Fit ANOVA model for Micro Array experiment |
| fom | Figure of Merit |
| geneprofile | Expression plot for selected genes |
| gridcheck | Plot grid-by-grid data comparison for arrays |
| kidney | Kidney Data from CAMDA |
| macluster | Clustering analysis for Micro Array experiment |
| makeModel | Make model object for N-dye Micro Array experiment |
| matest | Statistical test for Microarray experiment |
| paigen | Data for a multiple factor 28-array expeirment |
| rawdata | Data for a double dye-swap experiment |
| read.madata | Read Micro Array data from TAB delimited simple text file |
| resiplot | Residual plot for Micro Array Experiment |
| riplot | Ratio intensity plot for 2-dye Micro Array experiment |
| Rmaanova.version | Display the current version of the package |
| subset.madata | Subsetting Micro Array data objects |
| transform.madata | Micro Array experiment data transformation |
| transform.rawdata | Micro Array experiment data transformation |
| varplot | Variance component plot |
| volcano | Volcano plot for F test results |
| write.madata | Write Micro Array data to a TAB delimited simple text file |