Calibration and filtering of MALDI-TOF Peptide Mass Fingerprint data.

A C D E G H I L M P R S U W misc

-- A --

applycalib.calibintlist	Internal Calibration
applycalib.calibintstat	Internal Calibration
applycalib.calibrelist	Precalibration
applycalib.calibrestat	Precalibration
applycalib.calibspline	External Calbiration
applyextcalib.massvector	External Calbiration
applyextcalib.massvectorlist	External Calbiration
applyintcalib.massvector	Internal Calibration
applyintcalib.massvectorlist	Internal Calibration
applyrecalib.massvector	Precalibration
applyrecalib.massvectorlist	Recalibration
as.data.frame.mlist	Data Frames
as.list.massvectorlist	List
as.lm.calibintstat	Fitting Linear Models
as.matrix.massvector	Matrices
as.matrix.mlist	Matrices
as.vector.calibintstat	Coerces to vectors
as.vector.calibrestat	Coerces to vector
as.vector.massvector	Vector

-- C --

c.massvector	Combine Massvectors into one Massvector.
c.massvectorlist	Combine
cal	Calibration masses
calibexternal.massvector	External Calbiration
calibexternal.massvectorlist	External Calbiration
calibintlist	Constructor
calibintstat	Constructor
caliblist	Constructor
calibrelist	Constructor
calibrestat	Constructor
calibspline	Constructor
compare.massvector	Compares massvectors
correctinternal.massvector	Internal Calibration
correctinternal.massvectorlist	Internal Calibration

-- D --

diffFilter.massvector	Abundant Differences
diffFilter.massvectorlist	Abundant Differences

-- E --

experiment.mlist

Info Acces

-- G --

gamasses.massvector	Abundant masses
gamasses.massvectorlist	Abundant masses
getaccC	Find Matching Masses
getdiff.massvector	Massdifferences
getdiff.massvectorlist	Massdifferences
getextcalib.massvector	External Error Model
getextcalib.massvectorlist	External Error Model
getglobalcalib.massvectorlist	Set Based Internal Calbiration
getintcalib.massvector	Internal Calbiration.
getintcalib.massvectorlist	Internal Calbiration
getPPGmasses	PPG masses
getrecalib.massvector	Precalibration
getrecalib.massvectorlist	Precalibration
globalcalib.massvectorlist	Set Based Internal Calibration

-- H --

hist.calibintlist	Histogram Plot
hist.calibrelist	Histogram Plot
hist.calibstat	Histogram
hist.massvector	Histograms
hist.massvectorlist	Histograms
hist.mylistobj	hist
histLengths	Histograms

-- I --

image.massvector	Display a Color Image
image.mlist	Display a Color Image
image.mylistobj	image
info.mlist	Info Acces
info.mylistobj	Info Acces
info.myobj	Info Acces

-- L --

length.massvector

Length of Massvector

-- M --

mass.massvector	Mass Access.
massvector	Constructor
massvectorlist	Constructor
max.massvector	Maxima and Minima
mget.massvector	Field Access
mget.mlist	Field Access
mget.mylistobj	Field Access
mget.myobj	Field Access
min.massvector	Maxima and Minima
mv1	Massvector with experimentally determined peptide masses.
mv2	Massvector with experimentally determined peptide masses.
mvFilter.massvector	Filtering Massvector
mvFilter.massvectorlist	Filtering Massvector
mvl	A list of 333 massvectors with experimentally determined peptide masses.
mvll	A list of 333 massvectors with experimentally determined peptide masses.

-- P --

peaks.massvector	Data Access
plot.calibintlist	Calibintlist Plotting
plot.calibintstat	Calibinstat Plotting
plot.caliblist	plot
plot.calibrelist	Plot
plot.calibspline	Calibspline Plotting
plot.calibstat	plot
plot.massvector	Massvector Plotting
plot.massvectorlist	Massvectorlist Plotting
plot.mylistobj	plot
ppg	A list of 12 massvectors wiht ppg masses.
print.calibintstat	Print calibintstat
print.caliblist	Print caliblist
print.calibrestat	Print Calibrestat Object
print.calibspline	Print Calibspline Object
print.calibstat	print
print.massvector	Print massvector
print.massvectorlist	Print massvectorlist
project.massvectorlist	Acces

-- R --

readF.massvector	Read Massvector
readF.massvectorlist	Reads massvectorlist
recalibrate.massvector	Precalibration
recalibrate.massvectorlist	Precalibration
residuals.massvector	Residues of 2 massvectors.

-- S --

subset.mlist	Subset mlist
summary.calibintstat	Calibintstat Summaries
summary.calibspline	Calibspline Summaries
summary.calibstat	Calibstat summary
summary.massvector	Massvector Summaries
summary.mlist	mist Summaries

-- U --

unlist.massvectorlist

Flatten massvectorlist

-- W --

writeF.massvector	Write massvector
writeF.massvectorlist	Write massvectorlist
wsdist.massvector	Wool Smilanski Distance Matrix
wsFilter.massvector	Smilanski Filtering
wsFilter.massvectorlist	Smilanski Filtering
wsiFilter.massvector	Smilanski Filtering

-- misc --

[.caliblist	Extract Parts of a Caliblist.
[.massvector	Extract Parts of an Massvector
[.massvectorlist	Extract Parts of an Massvectorlist.
[Assing.massvectorlist	Replace Parts of Massvectorlist
[[Assing.caliblist	Replace calibstat object in the caliblist.
[[Assing.massvectorlist	Replace Parts of an Object