theta.s.landscape {rmetasim}R Documentation

Calculate theta using segregating sites

Description

Calculate theta from a landscape based upon the number of seqregating sites.

Usage

 theta.s.mat <- theta.s.landscape(rland)

Arguments

rland the Rmetasim landscape object

Details

Uses routines in the package 'ape'

Value

A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination

See Also

theta.k.landscape, theta.h.landscape

Examples

  exampleland <- new.example.landscape()
  exampleland <- simulate.landscape(exampleland, 4)

  library(ape)
  theta.s.mat <- theta.s.landscape(exampleland)
  theta.s.mat

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