tablecode {seqinr}R Documentation

to plot genetic code as in textbooks

Description

This function plots a genetic code table as in textbooks, that is following the order u > c > a > g so that synonymous codons are almost always in the same boxes.

Usage

tablecode(numcode = 1, urn.rna = c("u", "c", "a", "g"), dia = TRUE)

Arguments

numcode The genetic code number as in translate
urn.rna The letters to display codons, use c("t","c", "a","g") if you want the code in terms of DNA sequence
dia to produce a yellow/blue plot for slides

Author(s)

J.R. Lobry

References

  To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

See Also

translate

Examples

 tablecode()

[Package seqinr version 1.0-3 Index]