getFrag {seqinr} | R Documentation |
Methods for the classes of sequences: SeqFastadna
, SeqFastaAA
, SeqAcnucWeb
, SeqFrag
.
getFrag(object, begin, end)
object |
an object of the class SeqFastadna , SeqFastaAA , SeqAcnucWeb or SeqFrag |
begin |
First base |
end |
Last base |
An object of class SeqFrag, which is a vector of chars with many attributes:
seqMother |
the name of the sequence from which the sequence comes |
begin |
the position of the first base of the fragment on the mother sequence |
end |
the position of the last base of the fragment on the mother sequence |
class |
the class of the new sequence i.e. SeqFrag |
D. Charif
To have an overview of the seqinR's functionnality, please consult this vignette:
Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical
computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.
methods(getFrag)