Species distribution modeling


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Documentation for package ‘dismo’ version 0.5-4

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dismo-package Species distribution modeling
acaule Solanum acaule data
Anguilla_grids Anguilla australis distribution data
Anguilla_test Anguilla australis distribution data
Anguilla_train Anguilla australis distribution data
bioclim Bioclim
bioclim,data.frame,missing-method Bioclim
bioclim,matrix,missing-method Bioclim
bioclim,Raster,data.frame-method Bioclim
bioclim,Raster,matrix-method Bioclim
bioclim,Raster,SpatialPoints-method Bioclim
bioclim,SpatialGridDataFrame,matrix-method Bioclim
bioclim,SpatialGridDataFrame,SpatialPoints-method Bioclim
biogeomancer Georeferencing
biovars bioclimatic variables
biovars,matrix,matrix,matrix-method bioclimatic variables
biovars,Raster,Raster,Raster-method bioclimatic variables
biovars,vector,vector,vector-method bioclimatic variables
boxplot Box plot of model evaluation data
boxplot,ModelEvaluation-method Box plot of model evaluation data
calc.deviance Calculate deviance
circles Circles range
circles,data.frame-method Circles range
circles,matrix-method Circles range
circles,SpatialPoints-method Circles range
convHull Convex hull model
convHull,data.frame-method Convex hull model
convHull,matrix-method Convex hull model
convHull,SpatialPoints-method Convex hull model
density density
density,DistModel-method density
density,ModelEvaluation-method density
dismo Species distribution modeling
domain Domain
domain,data.frame,missing-method Domain
domain,matrix,missing-method Domain
domain,Raster,data.frame-method Domain
domain,Raster,matrix-method Domain
domain,Raster,SpatialPoints-method Domain
ecocrop Ecocrop model
evaluate Model testing
evaluateROCR Model testing with the ROCR package
gbif Data from GBIF
gbm.fixed gbm fixed
gbm.holdout gbm holdout
gbm.interactions gbm interactions
gbm.perspec gbm perspective plot
gbm.plot gbm plot
gbm.plot.fits gbm plot fitted values
gbm.simplify gbm simplify
gbm.step gbm step
geocode Georeferencing with Google
geoDist Geographic distance model
geoDist,data.frame-method Geographic distance model
geoDist,matrix-method Geographic distance model
geoDist,SpatialPoints-method Geographic distance model
getCrop Ecocrop model
gmap Get a Google map
gridSample Stratified regular sample on a grid
idwModel Inverse-distance weighted model
idwModel,data.frame,data.frame-method Inverse-distance weighted model
idwModel,matrix,matrix-method Inverse-distance weighted model
idwModel,SpatialPoints,SpatialPoints-method Inverse-distance weighted model
kfold k-fold partitioning
mahal Mahalanobis model
mahal,data.frame,missing-method Mahalanobis model
mahal,matrix,missing-method Mahalanobis model
mahal,Raster,data.frame-method Mahalanobis model
mahal,Raster,matrix-method Mahalanobis model
mahal,Raster,SpatialPoints-method Mahalanobis model
maxent Maxent
maxent,data.frame,vector-method Maxent
maxent,missing,missing-method Maxent
maxent,Raster,ANY-method Maxent
maxent,SpatialGridDataFrame,ANY-method Maxent
Mercator Get a Google map
movingFun Moving functions
pairs Pair plots
pairs,DistModel-method Pair plots
plot,Bioclim,missing-method Plot predictor values
plot,DistModel,numeric-method Plot predictor values
plot,ModelEvaluation,character-method Plot model evaluation data
points,DistModel-method Plot predictor values
pointValues point values
predict Distribution model predictions
predict,Bioclim-method Distribution model predictions
predict,ConvexHull-method Distribution model predictions
predict,Domain-method Distribution model predictions
predict,Mahalanobis-method Distribution model predictions
predict,MaxEnt-method Distribution model predictions
prepareData Prepare data for model fitting
randomPoints Random points
shapefile read a shapefile
voronoiHull Voronoi hull model
voronoiHull,data.frame,data.frame-method Voronoi hull model
voronoiHull,matrix,matrix-method Voronoi hull model
voronoiHull,SpatialPoints,SpatialPoints-method Voronoi hull model