A B C D E F G I L M P R S T U V W misc
Absent | Accessor and Replacement Functions for "gendata" Objects |
Absent,genbinary-method | Class "genbinary" |
Absent<- | Accessor and Replacement Functions for "gendata" Objects |
Absent<-,genbinary-method | Class "genbinary" |
Bruvo.distance | Genetic Distance Metric of Bruvo et al. |
calcFst | Calculate Wright's Pairwise FST |
deleteLoci | Remove Samples or Loci from an Object |
deleteLoci,genambig-method | Class "genambig" |
deleteLoci,genbinary-method | Class "genbinary" |
deleteLoci,gendata-method | Class "gendata" |
deleteSamples | Remove Samples or Loci from an Object |
deleteSamples,genambig-method | Class "genambig" |
deleteSamples,genbinary-method | Class "genbinary" |
deleteSamples,gendata-method | Class "gendata" |
Description | Accessor and Replacement Functions for "gendata" Objects |
Description,gendata-method | Class "gendata" |
Description<- | Accessor and Replacement Functions for "gendata" Objects |
Description<-,gendata-method | Class "gendata" |
deSilvaFreq | Estimate Allele Frequencies with EM Algorithm |
editGenotypes | Edit Genotypes Using the Data Editor |
editGenotypes,genambig-method | Class "genambig" |
editGenotypes,genbinary-method | Class "genbinary" |
estimatePloidy | Estimate Ploidies Based on Allele Counts |
estimatePloidy,genambig-method | Class "genambig" |
estimatePloidy,genbinary-method | Class "genbinary" |
FCRinfo | Additional Data on Rubus Samples |
find.missing.gen | Find Missing Genotypes |
find.na.dist | Tools for Working With Pairwise Distance Arrays |
find.na.dist.not.missing | Tools for Working With Pairwise Distance Arrays |
genambig-class | Class "genambig" |
genambig.to.genbinary | Convert Between Genotype Object Classes |
genbinary-class | Class "genbinary" |
genbinary.to.genambig | Convert Between Genotype Object Classes |
gendata-class | Class "gendata" |
Genotype | Accessor and Replacement Functions for "gendata" Objects |
Genotype,genambig-method | Class "genambig" |
Genotype,genbinary-method | Class "genbinary" |
Genotype<- | Accessor and Replacement Functions for "gendata" Objects |
Genotype<-,genambig-method | Class "genambig" |
Genotypes | Accessor and Replacement Functions for "gendata" Objects |
Genotypes,genambig-method | Class "genambig" |
Genotypes,genbinary-method | Class "genbinary" |
Genotypes<- | Accessor and Replacement Functions for "gendata" Objects |
Genotypes<-,genambig-method | Class "genambig" |
Genotypes<-,genbinary-method | Class "genbinary" |
initialize,genambig-method | Class "genambig" |
initialize,genbinary-method | Class "genbinary" |
initialize,gendata-method | Class "gendata" |
isMissing | Determine Whether Genotypes Are Missing |
isMissing,genambig-method | Class "genambig" |
isMissing,genbinary-method | Class "genbinary" |
Loci | Accessor and Replacement Functions for "gendata" Objects |
Loci,gendata,missing-method | Class "gendata" |
Loci,gendata,numeric-method | Class "gendata" |
Loci<- | Accessor and Replacement Functions for "gendata" Objects |
Loci<-,genambig-method | Class "genambig" |
Loci<-,genbinary-method | Class "genbinary" |
Loci<-,gendata-method | Class "gendata" |
Lynch.distance | Calculate Band-Sharing Dissimilarity Between Genotypes |
meandist.from.array | Tools for Working With Pairwise Distance Arrays |
meandistance.matrix | Mean Pairwise Distance Matrix |
merge | Merge Two Genotype Objects into One |
merge,genambig,genambig-method | Merge Two Genotype Objects into One |
merge,genbinary,genbinary-method | Merge Two Genotype Objects into One |
merge,gendata,gendata-method | Merge Two Genotype Objects into One |
merge-methods | Merge Two Genotype Objects into One |
Missing | Accessor and Replacement Functions for "gendata" Objects |
Missing,gendata-method | Class "gendata" |
Missing<- | Accessor and Replacement Functions for "gendata" Objects |
Missing<-,genambig-method | Class "genambig" |
Missing<-,genbinary-method | Class "genbinary" |
Missing<-,gendata-method | Class "gendata" |
Ploidies | Accessor and Replacement Functions for "gendata" Objects |
Ploidies,gendata-method | Class "gendata" |
Ploidies<- | Accessor and Replacement Functions for "gendata" Objects |
Ploidies<-,gendata-method | Class "gendata" |
PopInfo | Accessor and Replacement Functions for "gendata" Objects |
PopInfo,gendata-method | Class "gendata" |
PopInfo<- | Accessor and Replacement Functions for "gendata" Objects |
PopInfo<-,gendata-method | Class "gendata" |
PopNames | Accessor and Replacement Functions for "gendata" Objects |
PopNames,gendata-method | Class "gendata" |
PopNames<- | Accessor and Replacement Functions for "gendata" Objects |
PopNames<-,gendata-method | Class "gendata" |
PopNum | Accessor and Replacement Functions for "gendata" Objects |
PopNum,gendata,character-method | Class "gendata" |
PopNum<- | Accessor and Replacement Functions for "gendata" Objects |
PopNum<-,gendata,character-method | Class "gendata" |
Present | Accessor and Replacement Functions for "gendata" Objects |
Present,genbinary-method | Class "genbinary" |
Present<- | Accessor and Replacement Functions for "gendata" Objects |
Present<-,genbinary-method | Class "genbinary" |
read.ATetra | Read File in ATetra Format |
read.GeneMapper | Read GeneMapper Genotypes Tables |
read.GenoDive | Import Genotype Data from GenoDive File |
read.SPAGeDi | Read Genotypes in SPAGeDi Format |
read.Structure | Read Genotypes and Other Data from a Structure File |
read.Tetrasat | Read Data from a TETRASAT Input File |
Samples | Accessor and Replacement Functions for "gendata" Objects |
Samples,gendata,character,missing-method | Class "gendata" |
Samples,gendata,character,numeric-method | Class "gendata" |
Samples,gendata,missing,missing-method | Class "gendata" |
Samples,gendata,missing,numeric-method | Class "gendata" |
Samples,gendata,numeric,missing-method | Class "gendata" |
Samples,gendata,numeric,numeric-method | Class "gendata" |
Samples<- | Accessor and Replacement Functions for "gendata" Objects |
Samples<-,genambig-method | Class "genambig" |
Samples<-,genbinary-method | Class "genbinary" |
Samples<-,gendata-method | Class "gendata" |
simgen | Randomly Generated Data for Learning polysat |
simpleFreq | Simple Allele Frequency Estimator |
summary,genambig-method | Class "genambig" |
summary,genbinary-method | Class "genbinary" |
summary,gendata-method | Class "gendata" |
testgenotypes | Rubus Genotype Data for Learning polysat |
Usatnts | Accessor and Replacement Functions for "gendata" Objects |
Usatnts,gendata-method | Class "gendata" |
Usatnts<- | Accessor and Replacement Functions for "gendata" Objects |
Usatnts<-,gendata-method | Class "gendata" |
viewGenotypes | Print Genotypes to the Console |
viewGenotypes,genambig-method | Class "genambig" |
viewGenotypes,genbinary-method | Class "genbinary" |
write.ATetra | Write Genotypes in ATetra Format |
write.freq.SPAGeDi | Create a File of Allele Frequencies for SPAGeDi |
write.GeneMapper | Write Genotypes to a Table Similarly to ABI GeneMapper |
write.GenoDive | Write a File in GenoDive Format |
write.SPAGeDi | Write Genotypes in SPAGeDi Format |
write.Structure | Write Genotypes in Structure 2.3 Format |
write.Tetrasat | Write Genotype Data in Tetrasat Format |
[,genambig-method | Class "genambig" |
[,genbinary-method | Class "genbinary" |
[,gendata-method | Class "gendata" |