Statistical inference for partially observed Markov processes


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Documentation for package ‘pomp’ version 0.33-1

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A B C D E F G L M N O P R S T V W

-- --

pomp-package Partially-observed Markov processes

-- A --

as,pomp-method Methods of the "pomp" class
as.data.frame.pomp Methods of the "pomp" class

-- B --

basic.probes Some probes for partially-observed Markov processes
bsmc Liu and West Bayesian Particle Filter
bsmc,pomp-method Liu and West Bayesian Particle Filter
bsmc-pomp Liu and West Bayesian Particle Filter
bspline.basis B-spline bases

-- C --

coef,pomp-method Methods of the "pomp" class
coef-pomp Methods of the "pomp" class
coef<- Methods of the "pomp" class
coef<-,pomp-method Methods of the "pomp" class
coef<--pomp Methods of the "pomp" class
coerce,pomp,data.frame-method Methods of the "pomp" class
compare.mif Methods of the "mif" class
compare.pmcmc Methods of the "pmcmc" class
continue The MIF algorithm
continue,mif-method The MIF algorithm
continue,pmcmc-method The PMCMC algorithm
continue-mif The MIF algorithm
continue-pmcmc The PMCMC algorithm
conv.rec Methods of the "mif" class
conv.rec,mif-method Methods of the "mif" class
conv.rec,pmcmc-method Methods of the "pmcmc" class
conv.rec-mif Methods of the "mif" class
conv.rec-pmcmc Methods of the "pmcmc" class

-- D --

dacca Model of cholera transmission for historic Bengal.
data.array Methods of the "pomp" class
data.array,pomp-method Methods of the "pomp" class
data.array-pomp Methods of the "pomp" class
deulermultinom Euler-multinomial models
discrete.time.sim Plug-ins for dynamical models based on stochastic Euler algorithms
dprior Methods of the "pmcmc" class
dprior,pmcmc-method Methods of the "pmcmc" class
dprior-pmcmc Methods of the "pmcmc" class

-- E --

euler.sim Plug-ins for dynamical models based on stochastic Euler algorithms
euler.sir Seasonal SIR model implemented using two stochastic simulation algorithms.
eulermultinom Euler-multinomial models

-- F --

filter.mean Methods of the "mif" class
filter.mean,mif-method Methods of the "mif" class
filter.mean,pmcmc-method Methods of the "pmcmc" class
filter.mean-mif Methods of the "mif" class
filter.mean-pmcmc Methods of the "pmcmc" class

-- G --

gillespie.sim Plug-ins for dynamical models based on stochastic Euler algorithms
gillespie.sir Seasonal SIR model implemented using two stochastic simulation algorithms.

-- L --

logLik,mif-method Methods of the "mif" class
logLik,pmcmc-method Methods of the "pmcmc" class
logLik-mif Methods of the "mif" class
logLik-pmcmc Methods of the "pmcmc" class
LondonYorke Historical childhood disease incidence data

-- M --

mif The MIF algorithm
mif,mif-method The MIF algorithm
mif,pomp-method The MIF algorithm
mif-methods Methods of the "mif" class
mif-mif The MIF algorithm
mif-pomp The MIF algorithm

-- N --

nlf Fit Model to Data Using Nonlinear Forecasting (NLF)

-- O --

onestep.dens Plug-ins for dynamical models based on stochastic Euler algorithms
onestep.sim Plug-ins for dynamical models based on stochastic Euler algorithms
ou2 Two-dimensional Ornstein-Uhlenbeck process

-- P --

periodic.bspline.basis B-spline bases
pfilter Particle filter
pfilter,mif-method Particle filter
pfilter,pomp-method Particle filter
pfilter-mif Particle filter
pfilter-pomp Particle filter
plot,mif-method Methods of the "mif" class
plot,pmcmc-method Methods of the "pmcmc" class
plot,pomp-method Methods of the "pomp" class
plot,probe.matched.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot,probed.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot,spect.matched.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot,spect.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot-mif Methods of the "mif" class
plot-pmcmc Methods of the "pmcmc" class
plot-pomp Methods of the "pomp" class
plot-probe.matched.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot-probed.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plot-spect.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
plugins Plug-ins for dynamical models based on stochastic Euler algorithms
pmcmc The PMCMC algorithm
pmcmc,pmcmc-method The PMCMC algorithm
pmcmc,pomp-method The PMCMC algorithm
pmcmc-class The "pmcmc" class
pmcmc-methods Methods of the "pmcmc" class
pmcmc-pmcmc The PMCMC algorithm
pmcmc-pomp The PMCMC algorithm
pomp Partially-observed Markov process object.
pomp-methods Methods of the "pomp" class
pred.mean Methods of the "mif" class
pred.mean,mif-method Methods of the "mif" class
pred.mean-mif Methods of the "mif" class
pred.var Methods of the "mif" class
pred.var,mif-method Methods of the "mif" class
pred.var-mif Methods of the "mif" class
print,pomp-method Methods of the "pomp" class
print-pomp Methods of the "pomp" class
probe Probe a partially-observed Markov process.
probe,pomp-method Probe a partially-observed Markov process.
probe,probed.pomp-method Probe a partially-observed Markov process.
probe-pomp Probe a partially-observed Markov process.
probe-probed.pomp Probe a partially-observed Markov process.
probe.acf Some probes for partially-observed Markov processes
probe.cor Some probes for partially-observed Markov processes
probe.cov Some probes for partially-observed Markov processes
probe.marginal Some probes for partially-observed Markov processes
probe.match Probe a partially-observed Markov process.
probe.match,pomp-method Probe a partially-observed Markov process.
probe.match,probed.pomp-method Probe a partially-observed Markov process.
probe.match-pomp Probe a partially-observed Markov process.
probe.match-probed.pomp Probe a partially-observed Markov process.
probe.matched.pomp-methods Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
probe.mean Some probes for partially-observed Markov processes
probe.median Some probes for partially-observed Markov processes
probe.period Some probes for partially-observed Markov processes
probe.quantile Some probes for partially-observed Markov processes
probe.sd Some probes for partially-observed Markov processes
probe.var Some probes for partially-observed Markov processes
probed.pomp-methods Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
profile.design Design matrices for likelihood slices and profiles

-- R --

reulermultinom Euler-multinomial models
ricker Ricker model with Poisson observations.
rw2 Two-dimensional random-walk process

-- S --

show,pomp-method Methods of the "pomp" class
show-pomp Methods of the "pomp" class
simulate,pomp-method Running simulations of a partially-observed Markov process
simulate-pomp Running simulations of a partially-observed Markov process
slice.design Design matrices for likelihood slices and profiles
sobol Sobol' low-discrepancy sequence
spect Power spectrum computation for partially-observed Markov processes.
spect,pomp-method Power spectrum computation for partially-observed Markov processes.
spect,spect.pomp-method Power spectrum computation for partially-observed Markov processes.
spect-pomp Power spectrum computation for partially-observed Markov processes.
spect-spect.pomp Power spectrum computation for partially-observed Markov processes.
spect.match Power spectrum computation for partially-observed Markov processes.
spect.match,pomp-method Power spectrum computation for partially-observed Markov processes.
spect.match,spect.pomp-method Power spectrum computation for partially-observed Markov processes.
spect.match-pomp Power spectrum computation for partially-observed Markov processes.
spect.match-spect.pomp Power spectrum computation for partially-observed Markov processes.
spect.matched.pomp-methods Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
spect.pomp-methods Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
states Methods of the "pomp" class
states,pomp-method Methods of the "pomp" class
states-pomp Methods of the "pomp" class
summary,probe.matched.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary,probed.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary,spect.matched.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary,spect.pomp-method Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary-probe.matched.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary-probed.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary-spect.matched.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes
summary-spect.pomp Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes

-- T --

time,pomp-method Methods of the "pomp" class
time-pomp Methods of the "pomp" class
time<- Methods of the "pomp" class
time<-,pomp-method Methods of the "pomp" class
time<--pomp Methods of the "pomp" class
timezero Methods of the "pomp" class
timezero,pomp-method Methods of the "pomp" class
timezero-pomp Methods of the "pomp" class
timezero<- Methods of the "pomp" class
timezero<-,pomp-method Methods of the "pomp" class
timezero<--pomp Methods of the "pomp" class
traj.match Trajectory matching
trajectory Compute trajectories of the determinstic skeleton.
trajectory,pomp-method Compute trajectories of the determinstic skeleton.
trajectory-pomp Compute trajectories of the determinstic skeleton.

-- V --

verhulst Simple Verhulst-Pearl (logistic) model.

-- W --

window,pomp-method Methods of the "pomp" class
window--pomp Methods of the "pomp" class