Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models


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Documentation for package ‘scaRabee’ version 1.0-2

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scaRabee-package scaRabee Toolkit
bound.parameters Forces parameter estimates between defined boundaries.
compute.secondary Computes secondary parameter values
create.intervals Create Integration Intervals Based on Dosing History
estimation.plot Create Summary Estimation Plots
finalize.report Finalize Estimation Report
find.id Scan for Integers in a Sorted Vector and Return Table of Min and Max Indices
fitmle Maximum Likelihood Estimator
fitmle.cov Computation of the Covariance Matrix
get.cov.matrix Computation of the Covariance Matrix
get.layout Layout for Lattice Functions
get.param.data Extract data from scaRabee parameter table
get.secondary Computation of Secondary Parameter Estimates
init.report Initiliaze Iteration Log and Report Files
order.param.list Sort a scaRabee parameter table
pder Compute Matrix of Partial Derivatives
problem.eval Evaluation of structural and residual variability models
residual.report Create of Predictions & Residuals Report
scaRabee scaRabee Toolkit
scarabee.analysis Run a scaRabee analysis
scarabee.clean Cleaning of the Run Directory
scarabee.directory Creation of the Run Directory
scarabee.new Create a scaRabee Analysis Folder
simulation.plot Create Simulation Plots
simulation.report Simulations
weighting.additive Default Residual Variability Model