Quantitative analysis of MALDI-TOF MS data


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Documentation for package ‘MALDIquant’ version 0.2

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MALDIquant-package Quantitative analysis of MALDI-TOF MS data
.estimateBaselineConvexHull Estimates the baseline by a Convex Hull.
.estimateBaselineMovingEstimator Estimates the baseline by moving estimators.
.estimateBaselineSnip Estimates the baseline by SNIP algorithm.
AbstractSpectrumData-class Class "AbstractSpectrumData"
as.matrix-method Class "AbstractSpectrumData"
createSingleSpectrum Creates a SingleSpectrum object.
estimateBaseline Estimates the baseline of a SingleSpectrum object.
estimateBaseline-method Estimates the baseline of a SingleSpectrum object.
importSingleSpectrum Imports/Reads a single mass spectrum from file.
intensity Class "AbstractSpectrumData"
intensity-method Class "AbstractSpectrumData"
intensity<- Class "AbstractSpectrumData"
intensity<--method Class "AbstractSpectrumData"
isEmpty Class "AbstractSpectrumData"
isEmpty-method Class "AbstractSpectrumData"
labelPeaks Draws peak labels to plot.
labelPeaks-method Draws peak labels to plot.
length-method Class "AbstractSpectrumData"
lines-method Class "AbstractSpectrumData"
MALDIquant Quantitative analysis of MALDI-TOF MS data
mass Class "AbstractSpectrumData"
mass-method Class "AbstractSpectrumData"
mass<- Class "AbstractSpectrumData"
mass<--method Class "AbstractSpectrumData"
metaData Class "AbstractSpectrumData"
metaData-method Class "AbstractSpectrumData"
metaData<- Class "AbstractSpectrumData"
metaData<--method Class "AbstractSpectrumData"
plot-method Plots a AbstractSpectrumData object.
removeBaseline Removes the baseline of a SingleSpectrum object.
removeBaseline-method Removes the baseline of a SingleSpectrum object.
SinglePeakList-class Class "SinglePeakList"
SingleSpectrum-class Class "SingleSpectrum"