cgdsr-package | CGDS-R : a library for accessing the MSKCC Cancer Genomics Data Server (CGDS). |
CGDS | Construct a CGDS connection object |
cgdsr | CGDS-R : a library for accessing the MSKCC Cancer Genomics Data Server (CGDS). |
cgdsr-CGDS | Construct a CGDS connection object |
cgdsr-getCancerTypes | Get available cancer types available in CGDS |
cgdsr-getCaseLists | Get available case lists for a specific cancer type |
cgdsr-getGeneticProfiles | Get available genetic data profiles for a specific cancer type |
cgdsr-getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
cgdsr-plot | Generic plot function for CGDS API data. |
cgdsr-processURL | Internal methods for CGDS library. |
cgdsr-setVerbose | Set verbose logging level for CGDS function calls |
cgdsr-test | Simple test suite for CGDS object. |
getCancerTypes | Get available cancer types available in CGDS |
getCancerTypes.CGDS | Get available cancer types available in CGDS |
getCaseLists | Get available case lists for a specific cancer type |
getCaseLists.CGDS | Get available case lists for a specific cancer type |
getGeneticProfiles | Get available genetic data profiles for a specific cancer type |
getGeneticProfiles.CGDS | Get available genetic data profiles for a specific cancer type |
getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
getProfileData.CGDS | Retrieves genomic profile data for genes and genetic profiles. |
plot | Generic plot function for CGDS API data. |
plot.CGDS | Generic plot function for CGDS API data. |
processURL | Internal methods for CGDS library. |
processURL.CGDS | Internal methods for CGDS library. |
setVerbose | Set verbose logging level for CGDS function calls |
setVerbose.CGDS | Set verbose logging level for CGDS function calls |
test | Simple test suite for CGDS object. |
test.CGDS | Simple test suite for CGDS object. |