Phylogenetic tools for ecologists

Documentation for package ‘phylotools’ version 0.0.7.4

phylotools-package	Phylogenetic tools for ecologists
add.mat	Add matrix to current matrix
aln2dat	Convert ClustalX alignment data to dataframe
appendchar	Paste character according to the longest character.
complement	Get the complement sequences
dat2phy	Convert dataframe to phylip format
edgesub	Substitute character for a sequence from both sides.
fasta.split	Splite the fasta object to fasta objects
fmatch	Find the matching index
framsub	Pattern of substitutions of a dataframe.
phy2dat	Convert phylip file to dataframe
phylotools	Phylogenetic tools for ecologists
read.phylip	Read phylip file to memory.
rename.fasta	Renaming a fasta object given a reference table
reverse	Get the reverse sequence.
seq2fasta	Convert Seq file to fasta format
sub.tip.label	Substitute the tip labels of a phylogenetic tree
supermat	Build super matrix using PHYLIP files
uniquefasta	Deleting duplicated sequences in fasta object
write.mat	Save supermatrix