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| %~% | Test a character vector for a match against a regular expression |
| angleBetweenVectors | Undocumented functions |
| buildStepVectors | Undocumented functions |
| createCombinedGraphics | Visualise MriImage objects |
| createContactSheetGraphic | Visualise MriImage objects |
| createNeighbourhoodInfo | Class representing a cuboidal neighbourhood in an image |
| createNiftiMetadata | Undocumented functions |
| createProjectionGraphic | Visualise MriImage objects |
| createSliceGraphic | Visualise MriImage objects |
| cross | Undocumented functions |
| deserialiseListObject | Undocumented functions |
| deserialiseMriImage | List object serialisation and deserialisation |
| deserialiseMriImageMetadata | List object serialisation and deserialisation |
| DicomMetadata | Class representing metadata extracted from a DICOM header |
| dictionary | DICOM tag dictionary |
| displayGraphic | Undocumented functions |
| ensureFileSuffix | Undocumented functions |
| equivalent | Test two numeric vectors for equivalence |
| execute | Undocumented functions |
| expandFileName | Undocumented functions |
| extractDataFromMriImage | Undocumented functions |
| flag | The TractoR message reporting system |
| generateImageDataForShape | Functions for creating MriImage objects from data |
| getColourScale | Undocumented functions |
| getDataTypeByNiftiCode | MriImage data types |
| getDescriptionForDicomTag | Undocumented functions |
| getParametersForFileType | Undocumented functions |
| hasNiftiMagicString | Undocumented functions |
| identifyImageFileNames | Working with MRI images stored in NIfTI and Analyze formats |
| image.mri | Class representing an MRI image |
| imageFileExists | Working with MRI images stored in NIfTI and Analyze formats |
| implode | Create a character string by concatenating the elements of a vector |
| info.neighbourhood | Class representing a cuboidal neighbourhood in an image |
| inherit | Undocumented functions |
| interpolatePalette | Undocumented functions |
| interpolatePng | Undocumented functions |
| isDeserialisable | List object serialisation and deserialisation |
| isDicomMetadata | Class representing metadata extracted from a DICOM header |
| isListObject | The list.object class |
| isMriImage | Class representing an MRI image |
| isMriImageMetadata | Class representing metadata associated with an MRI image |
| isNeighbourhoodInfo | Class representing a cuboidal neighbourhood in an image |
| list.object | The list.object class |
| locateExecutable | Undocumented functions |
| maskPixels | Undocumented functions |
| Math.image.mri | Class representing an MRI image |
| maximumIntensityProjection | Undocumented functions |
| metadata.dicom | Class representing metadata extracted from a DICOM header |
| metadata.image.mri | Class representing metadata associated with an MRI image |
| MriImage | Class representing an MRI image |
| MriImageMetadata | Class representing metadata associated with an MRI image |
| NeighbourhoodInfo | Class representing a cuboidal neighbourhood in an image |
| newDicomMetadataFromFile | Class representing metadata extracted from a DICOM header |
| newMriImageAsShapeOverlay | Functions for creating MriImage objects from data |
| newMriImageByExtraction | Functions for creating MriImage objects from data |
| newMriImageByMasking | Functions for creating MriImage objects from data |
| newMriImageByThresholding | Functions for creating MriImage objects from data |
| newMriImageByTrimming | Functions for creating MriImage objects from data |
| newMriImageFromAnalyze | Undocumented functions |
| newMriImageFromDicom | Functions for reading images from DICOM files |
| newMriImageFromDicomDirectory | Functions for reading images from DICOM files |
| newMriImageFromDicomMetadata | Functions for reading images from DICOM files |
| newMriImageFromFile | Working with MRI images stored in NIfTI and Analyze formats |
| newMriImageFromNifti | Undocumented functions |
| newMriImageFromTemplate | Functions for creating MriImage objects from data |
| newMriImageMetadataFromAnalyze | Undocumented functions |
| newMriImageMetadataFromDicom | Functions for reading images from DICOM files |
| newMriImageMetadataFromDicomMetadata | Functions for reading images from DICOM files |
| newMriImageMetadataFromFile | Working with MRI images stored in NIfTI and Analyze formats |
| newMriImageMetadataFromNifti | Undocumented functions |
| newMriImageMetadataFromTemplate | Duplicates an MriImageMetadata object, possibly with modification |
| newMriImageWithBinaryFunction | Functions for creating MriImage objects from data |
| newMriImageWithData | Functions for creating MriImage objects from data |
| newMriImageWithSimpleFunction | Functions for creating MriImage objects from data |
| OL | The TractoR message reporting system |
| Ops.image.mri | Class representing an MRI image |
| output | The TractoR message reporting system |
| print.list.object | The list.object class |
| print.metadata.dicom | Class representing metadata extracted from a DICOM header |
| promote | Undocumented functions |
| readDiffusionParametersFromMetadata | Undocumented functions |
| removeImageFilesWithName | Working with MRI images stored in NIfTI and Analyze formats |
| reportFlags | The TractoR message reporting system |
| resolveVector | Undocumented functions |
| serialiseListObject | List object serialisation and deserialisation |
| setOutputLevel | The TractoR message reporting system |
| sortDicomDirectory | Sort a directory of DICOM files into series |
| stripNul | Undocumented functions |
| Summary.image.mri | Class representing an MRI image |
| superimposePng | Undocumented functions |
| vectorCrossProduct | Undocumented functions |
| vectorLength | Undocumented functions |
| writeMriImageToAnalyze | Undocumented functions |
| writeMriImageToFile | Working with MRI images stored in NIfTI and Analyze formats |
| writeMriImageToNifti | Undocumented functions |
| writePng | Undocumented functions |
| [.image.mri | Extract or replace subsets of the data in an MriImage object |
| [<-.image.mri | Extract or replace subsets of the data in an MriImage object |