colGxE | Genotypic TDT for Gene-Environment Interactions |
colMAFtrio | Remove SNPs or Trios |
colTDT | Genotypic TDT |
colTDT2way | Genotypic TDT for Two-Way Interactions |
colTDTinter2way | Genotypic TDT for Two-Way Interactions |
colTDTmaxStat | Maximum Genotypic TDT |
colTDTmaxTest | Maximum Genotypic TDT |
compPermTDT2way | Permutation-Based gTDT for Two-Way Interactions |
findLDblocks | Identifying LD blocks |
freq.hap | Case-Parent Trio Data |
getLD | Computation of LD Measures |
LDdata | Case-Parent Trio Data |
mat | Computation of LD Measures |
mat.test | Case-Parent Trio Data |
orderSNPs | Remove SNPs or Trios |
ped2geno | Transformation of Ped-File |
plot.getLD | Plotting a getLD Object |
plot.LDblocks | Plotting a LDblock Object |
print.colGxE | Genotypic TDT for Gene-Environment Interactions |
print.colTDT | Genotypic TDT |
print.colTDTepi | Genotypic TDT for Two-Way Interactions |
print.LDblock | Identifying LD blocks |
print.maxStatTrio | Maximum Genotypic TDT |
print.maxTestTrio | Maximum Genotypic TDT |
print.tdt | Genotypic TDT |
print.tdtEpi | Genotypic TDT for Two-Way Interactions |
read.pedfile | Reading a Ped File |
removeSNPs | Remove SNPs or Trios |
removeTrios | Remove SNPs or Trios |
simuBkMap | Case-Parent Trio Data |
splitBlocks | Identifying LD blocks |
step3way | Case-Parent Trio Data |
tdt | Genotypic TDT |
tdt2way | Genotypic TDT for Two-Way Interactions |
trio | Generate Trio Data Format Suitable for Trio Logic Regression |
trio.check | Check Case-Parent Trio Data for Mendelian Errors |
trio.data | Case-Parent Trio Data |
trio.gen.err | Case-Parent Trio Data |
trio.gen1 | Case-Parent Trio Data |
trio.gen2 | Case-Parent Trio Data |
trio.ped.err | Case-Parent Trio Data |
trio.ped1 | Case-Parent Trio Data |
trio.ped2 | Case-Parent Trio Data |
trio.permTest | Permutation Tests for Trio Logic Regression |
trio.sim | Simulate Case-Parent Trios |