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| PSCN-package | Parent Specific DNA Copy Number Estimation |
| ABmean | ABmean |
| ABmedian | ABmedian |
| ABtest | ABtest |
| Affy1027chr2 | TCGA sample 23-1027 Chromosome 2 from Affymetrix Platform |
| affymetrix.getAB | affymetrix.getAB |
| affymetrix.getlogRbfreq | affymetrix.getlogRbfreq |
| AffySW1417chr17 | Sample SW1417 Chromosome 17 from Affymetrix Platform |
| centro | centro |
| cluster.1 | cluster.1 |
| cluster.2 | cluster.2 |
| clustertest | clustertest |
| cnvlist.combine | cnvlist.combine |
| cnvlist.update | cnvlist.update |
| cnvlist4 | cnvlist |
| combine | combine |
| combine.sub | combine.sub |
| create.PSCN | create.PSCN |
| createHyper | Initialize Hyper Parameter |
| event.summary | Event Summary |
| getmusigma | Get Mean and Standard Deviation |
| group.number | Group Number |
| Illu0258chr2 | TCGA sample 02-0258 Chromosome 2 from Illumina Platform |
| Illu0332chr3 | TCGA sample 02-0332 Chromosome 3 from Illumina Platform |
| Illu0332chr3_mini | TCGA sample 02-0332 Chromosome 3 from Illumina Platform |
| illumina.getAB | illumina.getAB |
| illumina.getlogRbfreq | illumina.getlogRbfreq |
| initialHyper.PSCN | Initialize Hyper Parameters using Default Values |
| initialmixstate | Initialize Mix States |
| length.PSCN | PSCN length |
| LengthEnough | Check Segment Length |
| normal.comp | Normal density |
| plotsub | Plot Copy Number |
| print.PSCN | Print PSCN |
| printHyper | Print Hyper Parameter |
| PSCN | Parent Specific DNA Copy Number Estimation |
| pscn.plot | Plot Function for Visualizing PSCN results |
| pscnlist | Generate Lists Showing Parent Specific DNA Copy Numbers |
| readHyper | Read Hyper Parameter |
| regroup.theta | Regroup |
| segment | segment |
| segment.sub | segment.sub |
| segmentation | Segmentation |
| smooth.PSCN | Smooth PSCN |
| smoothing | Estimating Parent-Specific DNA Copy Number |
| WRank | Wilcoxon Rank Test |