A package for graphical modelling in R


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Documentation for package ‘gRbase’ version 1.4.1

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A B C D E F G H I J L M N O P Q R S T U V W

-- A --

ancestors Simple operations on undirected and directed acyclic graphs.
ancestralGraph Simple operations on undirected and directed acyclic graphs.
ancestralSet Simple operations on undirected and directed acyclic graphs.
arrayCombine Combine arrays
arrayExtendDomain Combine arrays
as.adjMAT Simple operations on undirected and directed acyclic graphs.
as.gmData Class "gmData" graphical meta data
as.gmData.array Class "gmData" graphical meta data
as.gmData.data.frame Class "gmData" graphical meta data
as.gmData.table Class "gmData" graphical meta data
as.parray Representation of and operations on multidimensional tables
ashtrees Crown dieback in ash trees

-- B --

BodyFat Body Fat Data
breastcancer Gene expression signatures for p53 mutation status in 250 breast cancer samples

-- C --

cad1 Coronary artery disease data
cad2 Coronary artery disease data
carcass Lean meat contents of 344 pig carcasses
carcassall Lean meat contents of 344 pig carcasses
chestSim Simulated data from the Chest Clinic example
chestSim1000 Simulated data from the Chest Clinic example
chestSim10000 Simulated data from the Chest Clinic example
chestSim100000 Simulated data from the Chest Clinic example
chestSim500 Simulated data from the Chest Clinic example
chestSim50000 Simulated data from the Chest Clinic example
children Simple operations on undirected and directed acyclic graphs.
closure Simple operations on undirected and directed acyclic graphs.
colSumsPrim Utility functions for gRbase
colwiseProd Utility functions for gRbase
combnPrim Generate All Combinations of n Elements Taken m at a Time
compareModels Generic function for model comparison
compile Compile and propagate functions
conc2pcor Partial correlation (matrix)
cov2pcor Partial correlation (matrix)

-- D --

dag Create undirected and directed graphs
dagList Create undirected and directed graphs
dataOrigin Class "gmData" graphical meta data
dataOrigin.gmData Class "gmData" graphical meta data
description Class "gmData" graphical meta data
description.gmData Class "gmData" graphical meta data
description<- Class "gmData" graphical meta data
description<-.gmData Class "gmData" graphical meta data
dietox Growth curves of pigs in a 3x3 factorial experiment
dumping Gastric Dumping

-- E --

edgeList Find edges in a graph and edges not in a graph.
edgeList.graphNEL Find edges in a graph and edges not in a graph.
edgeList.matrix Find edges in a graph and edges not in a graph.
edgeListMAT Find edges in a graph and edges not in a graph.

-- F --

fit Class "gRfit" - fitted graphical models
fit.hllm Hierarchical log-linear models
formula Class "gModel" - graphical models
formula.gModel Class "gModel" - graphical models
formula<- Class "gModel" - graphical models
formula<-.gModel Class "gModel" - graphical models

-- G --

getFit Class "gRfit" - fitted graphical models
getFit.gRfit Class "gRfit" - fitted graphical models
getFit<- Class "gRfit" - fitted graphical models
getFit<-.gRfit Class "gRfit" - fitted graphical models
glist2adjMAT Creates adjacency matrix for a graph from a list of generators
gmData Class "gModel" - graphical models
gmData.gModel Class "gModel" - graphical models
gmData<- Class "gModel" - graphical models
gmData<-.gModel Class "gModel" - graphical models
gModel Class "gModel" - graphical models
gModel-class Class "gModel" - graphical models
gRbase The package 'gRbase': summary information
gRfit Class "gRfit" - fitted graphical models

-- H --

hllm Hierarchical log-linear models
hllm-class Hierarchical log-linear models

-- I --

intersectPrim Utility functions for gRbase
iplot Function for plotting graphs using the 'igraph' package.
iplot.graphNEL Function for plotting graphs using the 'igraph' package.
is.complete Simple operations on undirected and directed acyclic graphs.
is.decomposition Simple operations on undirected and directed acyclic graphs.
is.insetlist Set operations
is.simplicial Simple operations on undirected and directed acyclic graphs.
is.subsetof Set operations
isin Set operations

-- J --

jTree RIP ordering and junction tree.
jTree.graphNEL RIP ordering and junction tree.
jTree.igraph RIP ordering and junction tree.
jTree.matrix RIP ordering and junction tree.

-- L --

latent Class "gmData" graphical meta data
latent.gmData Class "gmData" graphical meta data
latent<- Class "gmData" graphical meta data
latent<-.gmData Class "gmData" graphical meta data
lizard Lizard behaviour
lizardAGG Lizard behaviour
lizardRAW Lizard behaviour

-- M --

matchPrim Utility functions for gRbase
math Mathematics marks for students
mathmark Mathematics marks for students
maxCliqueMAT Simple operations on undirected and directed acyclic graphs.
maximalSets Set operations
mcs Maximum cardinality search on undirected graph.
mcs.graphNEL Maximum cardinality search on undirected graph.
mcs.igraph Maximum cardinality search on undirected graph.
mcs.matrix Maximum cardinality search on undirected graph.
mcsmarked Maximum cardinality search on undirected graph.
mcsmarked.graphNEL Maximum cardinality search on undirected graph.
mcsmarked.igraph Maximum cardinality search on undirected graph.
mcsmarked.matrix Maximum cardinality search on undirected graph.
mcsmarkedMAT Maximum cardinality search on undirected graph.
mcsMAT Maximum cardinality search on undirected graph.
mildew Mildew fungus
milkcomp Milk composition data
milkcomp1 Milk composition data
minimalSets Set operations
minimalTriang Minimal triangulation of an undirected graph
minimalTriangMAT Minimal triangulation of an undirected graph
moralize Moralize a directed acyclic graph
moralize.graphNEL Moralize a directed acyclic graph
moralize.igraph Moralize a directed acyclic graph
moralize.matrix Moralize a directed acyclic graph
moralizeMAT Moralize a directed acyclic graph
mpd Maximal prime subgraph decomposition
mpdMAT Maximal prime subgraph decomposition

-- N --

newgmData Class "gmData" graphical meta data
nLevels Class "gmData" graphical meta data
nLevels.array Representation of and operations on multidimensional tables
nLevels.gmData Class "gmData" graphical meta data
nLevels.parray Representation of and operations on multidimensional tables
nLevels<- Class "gmData" graphical meta data
nLevels<-.gmData Class "gmData" graphical meta data
nominal Class "gmData" graphical meta data
nominal.gmData Class "gmData" graphical meta data
nominal<- Class "gmData" graphical meta data
nominal<-.gmData Class "gmData" graphical meta data
nonEdgeList Find edges in a graph and edges not in a graph.
nonEdgeList.graphNEL Find edges in a graph and edges not in a graph.
nonEdgeList.matrix Find edges in a graph and edges not in a graph.
nonEdgeListMAT Find edges in a graph and edges not in a graph.
Nutrimouse The Nutrimouse Dataset

-- O --

obs Class "gmData" graphical meta data
observations Class "gmData" graphical meta data
observations.gmData Class "gmData" graphical meta data
observations<- Class "gmData" graphical meta data
observations<-.gmData Class "gmData" graphical meta data
ordinal Class "gmData" graphical meta data
ordinal.gmData Class "gmData" graphical meta data
ordinal<- Class "gmData" graphical meta data
ordinal<-.gmData Class "gmData" graphical meta data
outerPrim Utility functions for gRbase

-- P --

parents Simple operations on undirected and directed acyclic graphs.
parray Representation of and operations on multidimensional tables
print.gmData Class "gmData" graphical meta data
print.gModel Class "gModel" - graphical models
print.gRfit Class "gRfit" - fitted graphical models
print.parray Representation of and operations on multidimensional tables
print.ripOrder RIP ordering and junction tree.
propagate Compile and propagate functions

-- Q --

querygraph Query a graph

-- R --

rats Weightloss of rats
reinis Risk factors for coronary heart disease.
removeRedundant Set operations
rip RIP ordering and junction tree.
rip.graphNEL RIP ordering and junction tree.
rip.igraph RIP ordering and junction tree.
rip.matrix RIP ordering and junction tree.
ripMAT RIP ordering and junction tree.
rowSumsPrim Utility functions for gRbase

-- S --

setdiffPrim Utility functions for gRbase
shortNames Class "gmData" graphical meta data
shortNames.gmData Class "gmData" graphical meta data
shortNames<- Class "gmData" graphical meta data
shortNames<-.gmData Class "gmData" graphical meta data
simplicialNodes Simple operations on undirected and directed acyclic graphs.
stepwise.hllm Hierarchical log-linear models
subsetof Set operations
summary.gmData Class "gmData" graphical meta data
summary.gRfit Class "gRfit" - fitted graphical models

-- T --

tableDiv Compute table margin or table slice
tableMargin Compute table margin or table slice
tableMarginPrim Representation of and operations on multidimensional tables
tableMult Compute table margin or table slice
tableOp Compute table margin or table slice
tableOp2 Compute table margin or table slice
tablePerm Compute table margin or table slice
tableSlice Compute table margin or table slice
tableSlicePrim Compute table margin or table slice
triangulate Triangulation of an undirected graph
triangulate.graphNEL Triangulation of an undirected graph
triangulate.igraph Triangulation of an undirected graph
triangulate.matrix Triangulation of an undirected graph
triangulateMAT Triangulation of an undirected graph

-- U --

ug Create undirected and directed graphs
ugList Create undirected and directed graphs
uniquePrim Utility functions for gRbase
unlistPrim Utility functions for gRbase

-- V --

validVarTypes Admissible variable types in gmData objects
valueLabels Class "gmData" graphical meta data
valueLabels.array Representation of and operations on multidimensional tables
valueLabels.gmData Class "gmData" graphical meta data
valueLabels.parray Representation of and operations on multidimensional tables
valueLabels<- Class "gmData" graphical meta data
valueLabels<-.gmData Class "gmData" graphical meta data
varNames Class "gmData" graphical meta data
varNames.array Representation of and operations on multidimensional tables
varNames.gmData Class "gmData" graphical meta data
varNames.parray Representation of and operations on multidimensional tables
varNames<- Class "gmData" graphical meta data
varNames<-.gmData Class "gmData" graphical meta data
varTypes Class "gmData" graphical meta data
varTypes.gmData Class "gmData" graphical meta data
varTypes<- Class "gmData" graphical meta data
varTypes<-.gmData Class "gmData" graphical meta data
vpar Simple operations on undirected and directed acyclic graphs.

-- W --

wine Chemical composition of wine