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| addOffspring | Modify the pedigree of 'linkdat' objects |
| addParents | Modify the pedigree of 'linkdat' objects |
| as.data.frame.linkdat | linkdat objects |
| cousinPed | Create simple pedigrees |
| createPedigree | Create simple pedigrees |
| descendants | linkdat utilities |
| dominant | Example pedigree for linkage analysis: 23 individuals, 650 SNPs |
| genoDistr | Genotype probability distribution |
| getMarkers | Marker genotypes for linkdat objects |
| halfCousinPed | Create simple pedigrees |
| likelihood | Pedigree likelihood |
| linkage.power | Power of a linkage study |
| linkdat | linkdat objects |
| lod | Two-point LOD score |
| markers | Marker genotypes for linkdat objects |
| mendelianCheck | Marker genotypes for linkdat objects |
| modifyMarker | Marker genotypes for linkdat objects |
| modifyPedigree | Modify the pedigree of 'linkdat' objects |
| nuclearPed | Create simple pedigrees |
| offspring | linkdat utilities |
| pedigreeLoops | linkdat utilities |
| plot.linkdat | Plot pedigrees with genotypes |
| plot.linkres | S3 methods for class 'linkres'. |
| power.varyPar | Power of a linkage study |
| print.linkdat | linkdat objects |
| print.linkdat.model | Set, change or display the model parameters for 'linkdat' objects |
| print.linkres | S3 methods for class 'linkres'. |
| randomPed | Random pedigree |
| read.linkdat | Read/write 'linkdat' objects |
| relabel | Modify the pedigree of 'linkdat' objects |
| removeIndiv | Modify the pedigree of 'linkdat' objects |
| setMarkers | Marker genotypes for linkdat objects |
| setModel | Set, change or display the model parameters for 'linkdat' objects |
| setSim | Simulation vector for 'linkdat' objects |
| SNPsim | Simulate SNP markers |
| spouses | linkdat utilities |
| summary.linkdat | linkdat objects |
| summary.linkres | S3 methods for class 'linkres'. |
| swapAff | Modify the pedigree of 'linkdat' objects |
| swapSex | Modify the pedigree of 'linkdat' objects |
| swapSim | Simulation vector for 'linkdat' objects |
| toyped | Toy pedigree for linkage analysis |
| uninformative | linkdat utilities |
| write.linkdat | Read/write 'linkdat' objects |
| Xped | Example pedigree with X-linked disease pattern. |