Time-of-flight mass spectra signal processing


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Documentation for package ‘rTOFsPRO’ version 1.4.1

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aplMeta alignedPeakListMetaData generation
chargeBkgr_call charge accumulation baseline calculation
circShift Circular shift of data record
coefNLFiltGG Nonlinear target filter coefficients for Gaussian wavelet
coefNLFiltGL Nonlinear target filter coefficients for Gaussian-Lorentizan signal
coefNLFiltLL Nonlinear target filter coefficients for Lorentzian signal
coefOptFiltGG Optimal linear target filter coefficients for Gaussian wavelet
coefOptFiltGL Optimal linear target filter coefficients for Gaussian-Lorentzian peak
coefOptFiltLL Optimal linear target filter coefficients for Lorentzian signal
coefTrunc Wavelet truncation
ExpBkgr_call Analytical background correction
findBsEnv Baseline envelope calculation
gausHalf Left-half Gaussian wavelet
gausRHalf Right-half Gaussian wavelet
geomavFilt Non-linear target filter
globalAlign Global alignment
hwfmGausPeak Gaussian peak-HWFM estimate
locjitdet Local shift detection
lorHalf Right-half Lorentzian wavelet
lorLHalf Left-half Lorentzian wavelet
mainRTOFsPROc Signal processing for TOF MS
mainRTOFsPROcModular Signal processing for TOF MS
matchedFilter Matched filter
matchFiltCoefGG Matched filter coefficients for Gaussian signal
matchFiltCoefGL Matched filter coefficients for Gaussian-Lorentzian signal
matchFiltCoefLL Matched filter coefficients for Lorentzian signal
mavSmoothing Moving average filter
msResample Integrative down-sampling
myxcorr Cross-correlation of two vectors
noiseEstmtr2 Gaussian noise STD-estimator
offsetBkgr_call Constant ADC offset background
optFilt Optimal linear filter
OutputForML Output for Matlab
peakAlignAv Peak alignment to average spectrum
peakWidth Peak half-width estimate
pedRmMAV_call Removes peak pedestal
pivPeak Pivot peak detection
pivpeak Pivot peak detection
plMeta Peak list meta-data maker
trgFilt Target filter coefficients
trivPP_call Trivial peak detection
userError Stops execution with user defined message