gwaaToHaplin |
Convert a loaded GenABEL 'gwaa.data' object to a Haplin format character matrix |
haplin |
Fitting log-linear models to case-parent triad and/or case-control data |
haplinSlide |
Fitting a sliding window of log-linear models to case-parent triad and/or case-control data |
haplinTDT |
Transmission disequilibrium tests for case-parent triad data |
haptable |
Create haplin table |
output |
Save files with summary, table, and plot from a haplin object. |
pedToHaplin |
Convert from ped format data to Haplin format |
plot.haplin |
Plot a haplin object |
plot.haplinTDT |
Plot a haplinTDT object |
pQQ |
QQ-plot with confidence intervals for a vector of p-values |
prepPed |
Extract family and phenotype information from a ped-format file, to prepare for use in Haplin |
print.haplin |
Print a haplin object |
print.summary.haplin |
Print the summary of a haplin object |
suest |
Compute a joint p-value for a list of haplin fits (usually from a sliding window approach), correcting for multiple testing. |
summary.haplin |
Summary of a haplin object |
summary.haplinTDT |
Summary of a haplinTDT object |
toDataFrame |
Stack dataframes from haplinSlide into a single dataframe |