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Documentation for package ‘LaplacesDemon’ version 12.01.02

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A B C D E G H I J K L M P Q R S T U V

LaplacesDemon-package The LaplacesDemon Package

-- A --

as.indicator.matrix Matrix Utility Functions
as.initial.values Initial Values
as.inverse Matrix Utility Functions
as.parm.matrix Matrix Utility Functions
as.parm.names Parameter Names
as.positive.definite Matrix Utility Functions
as.positive.semidefinite Matrix Utility Functions
as.symmetric.matrix Matrix Utility Functions

-- B --

BayesFactor Bayes Factor
BayesTheorem Bayes' Theorem
burnin Burn-in

-- C --

caterpillar.plot Caterpillar Plot
CenterScale Centering and Scaling
cloglog The log-log and complementary log-log functions
Combine Combine Demonoid Objects
Consort Consort with Laplace's Demon
Cov2Cor Matrix Utility Functions
Cov2Prec Precision
CSF Cumulative Sample Function

-- D --

dalaplace Asymmetric Laplace Distribution: Univariate
dallaplace Asymmetric Log-Laplace Distribution
dbern The Bernoulli Distribution
dcat The Categorical Distribution
ddirichlet The Dirichlet Distribution
de.Finetti.Game de Finetti's Game
delicit Prior Elicitation
demonsnacks Demon Snacks Data Set
dhalfcauchy Half-Cauchy Distribution
dhalfnorm Half-Normal Distribution
dhalft Half-t Distribution
dinvchisq (Scaled) Inverse-Chi-Squared Distribution
dinvgamma The Inverse Gamma Distribution
dinvgaussian The Inverse Gaussian Distribution
dinvwishart The Inverse Wishart Distribution
dlaplace Laplace Distribution: Univariate Symmetric
dlaplacep Laplace Distribution: Precision Parameterization
dllaplace Log-Laplace Distribution: Univariate Symmetric
dlnormp Log-Normal Distribution: Precision Parameterization
dmvc Multivariate Cauchy Distribution
dmvcp Multivariate Cauchy Distribution: Precision Parameterization
dmvl Multivariate Laplace Distribution
dmvn Multivariate Normal Distribution
dmvnp Multivariate Normal Distribution: Precision Parameterization
dmvpe Multivariate Power Exponential Distribution
dmvpolya Multivariate Polya Distribution
dmvt Multivariate t Distribution
dmvtp Multivariate t Distribution: Precision Parameterization
dnormp Normal Distribution: Precision Parameterization
dnormv Normal Distribution: Variance Parameterization
dpareto Pareto Distribution
dpe Power Exponential Distribution: Univariate Symmetric
dslaplace Skew-Laplace Distribution: Univariate
dst Student t Distribution: Univariate
dstp Student t Distribution: Precision Parameterization
dtrunc Truncated Distributions
dwishart The Wishart Distribution

-- E --

elicit Prior Elicitation
ESS Effective Sample Size due to Autocorrelation
extrunc Truncated Distributions

-- G --

Gelman.Diagnostic Gelman and Rubin's MCMC Convergence Diagnostic
Geweke.Diagnostic Geweke's Convergence Diagnostic
GIV Generate Initial Values

-- H --

Hessian Matrix Utility Functions
HPD Highest Posterior Density

-- I --

Importance Variable Importance
interval Constrain to Interval
invcloglog The log-log and complementary log-log functions
invlogit The logit and inverse-logit functions
invloglog The log-log and complementary log-log functions
is.amodal The Mode(s) of a Vector
is.appeased Appeased
is.bimodal The Mode(s) of a Vector
is.demonoid Demonoid and Laplace
is.laplace Demonoid and Laplace
is.multimodal The Mode(s) of a Vector
is.positive.definite Matrix Utility Functions
is.positive.semidefinite Matrix Utility Functions
is.square.matrix Matrix Utility Functions
is.stationary Stationarity
is.symmetric.matrix Matrix Utility Functions
is.trimodal The Mode(s) of a Vector
is.unimodal The Mode(s) of a Vector

-- J --

joint.density.plot Joint Density Plot

-- K --

KLD Kullback-Leibler Divergence (KLD)
KS.Diagnostic Kolmogorov-Smirnov Diagnostic

-- L --

LaplaceApproximation Laplace Approximation
LaplacesDemon Laplace's Demon
LML Logarithm of the Marginal Likelihood
logit The logit and inverse-logit functions
loglog The log-log and complementary log-log functions
lower.triangle Matrix Utility Functions

-- M --

MCSE Monte Carlo Standard Error
MCSS Monte Carlo Standard Error
Mode The Mode(s) of a Vector
Model.Spec.Time Model Specification Time
Modes The Mode(s) of a Vector

-- P --

palaplace Asymmetric Laplace Distribution: Univariate
pallaplace Asymmetric Log-Laplace Distribution
partial First Partial Derivative
pbern The Bernoulli Distribution
phalfcauchy Half-Cauchy Distribution
phalfnorm Half-Normal Distribution
phalft Half-t Distribution
plaplace Laplace Distribution: Univariate Symmetric
plaplacep Laplace Distribution: Precision Parameterization
pllaplace Log-Laplace Distribution: Univariate Symmetric
plnormp Log-Normal Distribution: Precision Parameterization
plot.demonoid Plot samples from the output of 'LaplacesDemon'
plot.demonoid.ppc Plots of Posterior Predictive Checks
plot.importance Plot Variable Importance
plot.laplace Plot the output of 'LaplaceApproximation'
plot.laplace.ppc Plots of Posterior Predictive Checks
pnormp Normal Distribution: Precision Parameterization
pnormv Normal Distribution: Variance Parameterization
PosteriorChecks Posterior Checks
ppareto Pareto Distribution
ppe Power Exponential Distribution: Univariate Symmetric
Prec2Cov Precision
prec2sd Precision
prec2var Precision
predict.demonoid Posterior Predictive Checks
predict.laplace Posterior Predictive Checks
print.demonoid Print an object of class 'demonoid' to the screen.
print.laplace Print an object of class 'laplace' to the screen.
pslaplace Skew-Laplace Distribution: Univariate
pst Student t Distribution: Univariate
pstp Student t Distribution: Precision Parameterization
ptrunc Truncated Distributions

-- Q --

qalaplace Asymmetric Laplace Distribution: Univariate
qallaplace Asymmetric Log-Laplace Distribution
qbern The Bernoulli Distribution
qhalfcauchy Half-Cauchy Distribution
qhalfnorm Half-Normal Distribution
qhalft Half-t Distribution
qlaplace Laplace Distribution: Univariate Symmetric
qlaplacep Laplace Distribution: Precision Parameterization
qllaplace Log-Laplace Distribution: Univariate Symmetric
qlnormp Log-Normal Distribution: Precision Parameterization
qnormp Normal Distribution: Precision Parameterization
qnormv Normal Distribution: Variance Parameterization
qpareto Pareto Distribution
qpe Power Exponential Distribution: Univariate Symmetric
qslaplace Skew-Laplace Distribution: Univariate
qst Student t Distribution: Univariate
qstp Student t Distribution: Precision Parameterization
qtrunc Truncated Distributions

-- R --

ralaplace Asymmetric Laplace Distribution: Univariate
rallaplace Asymmetric Log-Laplace Distribution
rbern The Bernoulli Distribution
rcat The Categorical Distribution
rdirichlet The Dirichlet Distribution
rhalfcauchy Half-Cauchy Distribution
rhalfnorm Half-Normal Distribution
rhalft Half-t Distribution
rinvchisq (Scaled) Inverse-Chi-Squared Distribution
rinvgamma The Inverse Gamma Distribution
rinvgaussian The Inverse Gaussian Distribution
rinvwishart The Inverse Wishart Distribution
rlaplace Laplace Distribution: Univariate Symmetric
rlaplacep Laplace Distribution: Precision Parameterization
rllaplace Log-Laplace Distribution: Univariate Symmetric
rlnormp Log-Normal Distribution: Precision Parameterization
rmvc Multivariate Cauchy Distribution
rmvcp Multivariate Cauchy Distribution: Precision Parameterization
rmvl Multivariate Laplace Distribution
rmvn Multivariate Normal Distribution
rmvnp Multivariate Normal Distribution: Precision Parameterization
rmvt Multivariate t Distribution
rmvtp Multivariate t Distribution: Precision Parameterization
rnormp Normal Distribution: Precision Parameterization
rnormv Normal Distribution: Variance Parameterization
rpareto Pareto Distribution
rpe Power Exponential Distribution: Univariate Symmetric
rslaplace Skew-Laplace Distribution: Univariate
rst Student t Distribution: Univariate
rstp Student t Distribution: Precision Parameterization
rtrunc Truncated Distributions
rwishart The Wishart Distribution

-- S --

sd2prec Precision
sd2var Precision
SIR Sampling Importance Resampling
summary.demonoid.ppc Posterior Predictive Check Summary
summary.laplace.ppc Posterior Predictive Check Summary

-- T --

tr Matrix Utility Functions

-- U --

upper.triangle Matrix Utility Functions

-- V --

var2prec Precision
var2sd Precision
vartrunc Truncated Distributions