This package provides some basic methods for meta-analysis

Documentation for package ‘MADAM’ version 1.1

MADAM-package	MADAM - Meta-Analytical Data Aggregation Methods Toolbox
calculateRankProduct	Calculate the rank product and asses the significance
calculateRankSum	Calculate the rank sum and assess the significance
corrNA	Functions to impute missing values
corrNAGroupwise	Function to filter features with missing values in a groupwise manner
corrVar	Function to replace variances of zero
default.zero.subst	Default zero significance replacement
doEnsemble	Method to perform an ensemble approach for meta-analysis.
doES	Method to wrap parameters for Effect Size Meta Analysis.
doRhodesFDR	Function for performing classical Rhodes MA method by deriving significance from p-values and permutating labels.
doRP	Function for calling RankProduct meta-analysis method by Breitling.
fisherMethod	Perform classical Fisher Method for combining p-values in a parallel manner.
fishersum	Function to calculate Fisher's sum.
generateRandomMAData	Calculate the rank product and asses the significance
MADAM	MADAM - Meta-Analytical Data Aggregation Methods Toolbox
multiTtest	Function to perform t-tests on a list of ExpressionSets.
plotFDR	Plot results significance against the rank of the significance.
plotHeatMap	Function for plotting ranklist heatmap.
plotMAVolcano	Function for MA-volcano plot
zScoreFDRClust	Tool for Meta-analysis of gene expression data.
zScoresClust	Tool for Meta-analysis of gene expression data.