MeDiChI ChIP-chip deconvolution library


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Documentation for package ‘MeDiChI’ version 0.4.0

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MeDiChI-package MeDiChI ChIP-chip deconvolution library
chip.deconv High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
coef.chip.deconv High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
coef.chip.deconv.entire.genome High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
data.halo.hires ChIP-chip data supporting the MeDiChI package
data.halo.lowres ChIP-chip data supporting the MeDiChI package
data.yeast.gcn4 ChIP-chip data supporting the MeDiChI package
deconv.entire.genome High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
fit.peak.profile Iteratively learn deconvolution kernel (peak profile) from real ChIP-chip data.
gene.coords ChIP-chip data supporting the MeDiChI package
generate.binding.profile Construct the binding profile ('kernel') required as input for 'chip.deconv' and 'deconv.entire.genome'.
generate.fake.data Generate simulated ChIP-chip data.
kernel.halo.hires ChIP-chip data supporting the MeDiChI package
kernel.halo.lowres ChIP-chip data supporting the MeDiChI package
kernel.yeast.gcn4 ChIP-chip data supporting the MeDiChI package
kernel.yeast.gcn4.jbd ChIP-chip data supporting the MeDiChI package
MeDiChI MeDiChI ChIP-chip deconvolution library
MeDiChI-data ChIP-chip data supporting the MeDiChI package
plot.chip.deconv High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
plot.chip.deconv.entire.genome High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
plot.fit.peak.profile Iteratively learn deconvolution kernel (peak profile) from real ChIP-chip data.
print.chip.deconv High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.
print.chip.deconv.entire.genome High-resolution model-based deconvolution of normalized ChIP-chip data derived from tiling arrays.