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| NSA-package | Package NSA |
| fitNSA | Find normal regions |
| fitNSA.matrix | Find normal regions |
| NSA | Package NSA |
| NSAByTotalAndFracB | Finds normal regions within tumoral samples (total,fracB) |
| NSAByTotalAndFracB.matrix | Finds normal regions within tumoral samples (total,fracB) |
| NSANormalization | The NSANormalization class |
| sampleNByTotalAndFracB | Normalize total copy numbers by samples (total,fracB) |
| sampleNByTotalAndFracB.numeric | Normalize total copy numbers by samples (total,fracB) |
| SampleNormalization | The SampleNormalization class |
| snpsNByTotalAndFracB | Normalize allele-specific copy numbers (total,fracB) |
| snpsNByTotalAndFracB.matrix | Normalize allele-specific copy numbers (total,fracB) |
| SNPsNormalization | The SNPsNormalization class |