Normalize NanoString miRNA and mRNA data


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Documentation for package ‘NanoStringNorm’ version 1.0.11

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NanoStringNorm-package A set of functions for Normalization of Nanostring miRNA and RNA expression levels. Currently, only one function "NanoStringNorm" is used for all combinations of Normalization.
background.normalization background.normalization
code.count.normalization code.count.normalization
get.batch.effects get.batch.effects
get.beta.se.and.p get.beta.se.and.p
get.gene.summary.stats get.gene.summary.stats
get.geo.mean get.geo.mean
get.mean.sd.and.cv get.mean.sd.and.cv
get.sample.summary.stats get.sample.summary.stats
get.trait.summary.stats get.trait.summary.stats
get.ttest.and.foldchange get.ttest.and.foldchange
NanoString An rda file storing NanoString example datasets. Currently, a data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
NanoString.mRNA A data.frame consisting of Nanostring Rat RNA expression values. The data were exported as a tab delimited file from the XLS results.
NanoStringNorm NanoStringNorm
other.normalization other.normalization
output.formatting output.formatting
Plot.NanoStringNorm Plot.NanoStringNorm
predict.concentration predict.concentration
probe.correction.factor.normalization probe.correction.factor.normalization
read.xls.RCC read.xls.RCC
sample.content.normalization sample.content.normalization