dic.fit |
Fitting log-normal models to doubly interval-censored data |
dic.getSE |
Calculates the standard errors for estimates from dic.fit() using the delta method. |
diclik |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
diclik2 |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
diclik2.helper1 |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
diclik2.helper2 |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
EMforCFR |
A function to estimate the relative case fatality ratio when reporting rates are time-varying and deaths are lagged because of survival time. |
exactlik |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
exp.win.lengths |
Exposure window lengths from an influenza outbreak at a NYC school |
fluA.inc.per |
Coarse incubation period data for influenza A |
fw1 |
Functions to calculate the product of the density and the likelihood weight functions. |
fw3 |
Functions to calculate the product of the density and the likelihood weight functions. |
fwFuncs |
Functions to calculate the product of the density and the likelihood weight functions. |
generate.coarse.data |
Simulate incubation period analyses with coarse data |
get.obs.type |
Generation of data types |
lik |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
LikelihoodFuncs |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
loglik |
General likelihood function used in the maximization performed in dic.fit(). |
pl.mu |
Profile likelihood helper functions used by dic.fit(). |
pl.sigma |
Profile likelihood helper functions used by dic.fit(). |
precision.simulation |
Simulate incubation period analyses with coarse data |
precision.simulation.coarse |
Simulate incubation period analyses with coarse data |
precision.simulation.exact |
Simulate incubation period analyses with coarse data |
ProfileLiks |
Profile likelihood helper functions used by dic.fit(). |
run.Estep |
The expectation step for a specialized EM algorithm |
run.Mstep |
The maximization step for a specialized EM algorithm |
SEM.variance |
Implementation of the Supplemented EM algorithm |
siclik |
Functions to calculate the likelihood for a given, possibly coarse, survival-time observation. |
simulated.outbreak.deaths |
Simulated case and death reports from a fictional outbreak |