Log-Gaussian Cox Process


[Up] [Top]

Documentation for package ‘lgcp’ version 0.9-1

Help Pages

A B C D E F G H I K L M N P Q R S T U V W X Y Z misc

-- A --

add.list add...
affine.fromFunction affine...
affine.fromSPDF affine...
affine.fromXYZ affine...
affine.SpatialPolygonsDataFrame affine...
affine.stppp affine...
andrieuthomsh andrieuthomsh function...
as.fromXYZ as...
as.fromXYZ.fromFunction as...
as.im.fromFunction as...
as.im.fromSPDF as...
as.im.fromXYZ as...
as.list.lgcpgrid as...
as.owin.stapp as...
as.owinlist as...
as.owinlist.SpatialPolygonsDataFrame as...
as.owinlist.stapp as...
as.ppp.stppp as...
as.SpatialGridDataFrame as...
as.SpatialGridDataFrame.fromXYZ as...
as.stppp as...
as.stppp.stapp as...
at at function...

-- B --

blockcircbase blockcircbase function...
bt.scalar bt...

-- C --

circulant circulant function...
circulant.matrix circulant...
circulant.numeric circulant...
computeGradtrunc computeGradtrunc function...
computeGradtruncSpatial computeGradtruncSpatial function...
computeGradtruncSpatioTemporal computeGradtruncSpatioTemporal function...
constanth constanth function...
constantInTime constantInTime function...
constantInTime.numeric constantInTime...
constantInTime.stppp constantInTime...
Cvb Cvb function...

-- D --

d.func d...
density.stppp density...
diffnorm2 diffnorm2 function...
dump2dir dump2dir function...

-- E --

eigenfrombase eigenfrombase function...
evallogprobY evallogprobY function...
exceedProbs exceedProbs function...
exceedProbsAggregated exceedProbsAggregated function...
expectation expectation function...
expectation.lgcpPredict expectation...
extract extract function...
extract.lgcpPredict extract...

-- F --

fftgrid fftgrid function...
fftinterpolate fftinterpolate function...
fftinterpolate.fromFunction fftinterpolate...
fftinterpolate.fromSPDF fftinterpolate...
fftinterpolate.fromXYZ interpolate...

-- G --

GAfinalise GAfinalise function...
GAfinalise.MonteCarloAverage GAfinalise...
GAfinalise.nullAverage GAfinalise...
GAinitialise GAinitialise function...
GAinitialise.MonteCarloAverage GAinitialise...
GAinitialise.nullAverage GAinitialise...
GammafromY GammafromY function...
GAreturnvalue GAreturnvalue function...
GAreturnvalue.MonteCarloAverage GAreturnvalue...
GAreturnvalue.nullAverage GAreturnvalue...
GAupdate GAupdate function...
GAupdate.MonteCarloAverage GAupdate...
GAupdate.nullAverage GAupdate...
getCounts getCounts function...
getRotation getRotation function...
getRotation.default getRotation...
getRotation.stppp getRotation...
GFfinalise GFfinalise function...
GFfinalise.dump2dir GFfinalise...
GFfinalise.nullFunction GFfinalise...
GFinitialise GFinitialise function...
GFinitialise.dump2dir GFinitialise...
GFinitialise.nullFunction GFinitialise...
GFreturnvalue GFreturnvalue function...
GFreturnvalue.dump2dir GFreturnvalue...
GFreturnvalue.nullFunction GFreturnvalue...
GFupdate GFupdate function...
GFupdate.dump2dir GFupdate...
GFupdate.nullFunction GFupdate...
ginhomAverage ginhomAverage function...
grad.comp grad...
gridav gridav function...
gridav.lgcpPredict gridav...
gridfun gridfun function...
gridfun.lgcpPredict gridfun...
gridInWindow gridInWindow function...
gu gu function...

-- H --

hasNext generic hasNext method...
hasNext.iter hasNext...
hvals hvals function...
hvals.lgcpPredict hvals...

-- I --

identify.lgcpPredict identify...
identifygrid identifygrid function...
image.lgcpgrid image...
initialiseAMCMC initialiseAMCMC function...
initialiseAMCMC.andrieuthomsh initaliseAMCMC...
initialiseAMCMC.constanth initaliseAMCMC...
intens intens function...
intens.lgcpPredict intens...
inversebase inversebase function...
is.burnin is this a burn-in iteration?
is.pow2 is...
is.retain do we retain this iteration?
is.SPD is...
iteration iteration number...

-- K --

KinhomAverage KinhomAverage function...

-- L --

lambdaEst lambdaEst function...
lgcp lgcp...
lgcpForecast lgcpForecast function...
lgcpgrid lgcpgrid function...
lgcpgrid.array lgcpgrid...
lgcpgrid.list lgcpgrid...
lgcpgrid.matrix lgcpgrid...
lgcppars lgcppars function...
lgcpPredict lgcpPredict function...
lgcpPredictAggregated lgcpPredictAggregated function...
lgcpPredictSpatial lgcpPredictSpatial function...
lgcpSim lgcpSim function...
lgcpSimSpatial lgcpSimSpatial function...
loc2poly loc2poly function...
loop.mcmc loop over an iterator...

-- M --

MALAlgcp MALAlgcp function...
MALAlgcpSpatial MALAlgcpSpatial function...
mcmcLoop iterator for MCMC loops...
mcmcpars mcmcpars function...
mcmcProgressNone null progress monitor...
mcmcProgressPrint printing progress monitor...
mcmcProgressTextBar text bar progress monitor...
mcmcProgressTk graphical progress monitor...
mcmctrace mcmctrace function...
mcmctrace.lgcpPredict mcmctrace...
meanfield meanfield function...
meanfield.lgcpPredict meanfield...
meanselect meanselect function...
MonteCarloAverage MonteCarloAverage function...
muEst muEst function...
multiply.list multiply...

-- N --

neattable neattable function...
nextStep next step of an MCMC chain...
normsq normsq function...
nullAverage nullAverage function...
nullFunction nullFunction function...

-- P --

plot.fromSPDF plot...
plot.fromXYZ plot...
plot.lgcpgrid plot...
plot.lgcpPredict plot...
plot.lgcpQuantiles plot...
plot.mcmcdiag plot...
plot.stppp plot...
plot.temporalAtRisk plot...
plotExceed plotExceed function...
plotExceed.array plotExceed...
plotExceed.lgcpPredict plotExceed...
print.dump2dir print...
print.fromFunction print...
print.fromSPDF print...
print.fromXYZ print...
print.gridaverage print...
print.lgcpgrid print...
print.lgcpPredict print...
print.mcmc print...
print.stapp print...
print.stppp print...
print.temporalAtRisk print...
proposal.means proposal...

-- Q --

quantile.lgcpgrid quantile...
quantile.lgcpPredict quantile...

-- R --

rescale.stppp rescale...
resetLoop reset iterator...
roteffgain roteffgain function...
rotmat rotmat function...
rr rr function...
rr.lgcpPredict rr...

-- S --

selectObsWindow selectObsWindow function...
selectObsWindow.default selectObsWindow...
selectObsWindow.stppp selectObsWindow...
serr serr function...
serr.lgcpPredict serr...
setoutput setoutput function...
setTxtProgressBar2 set the progress bar...
showGrid showGrid function...
showGrid.default showGrid...
showGrid.lgcpPredict showGrid...
showGrid.stppp showGrid...
smultiply.list smultiply...
spatialAtRisk spatialAtRisk function...
spatialAtRisk.bivden spatialAtRisk...
spatialAtRisk.default spatialAtRisk...
spatialAtRisk.fromXYZ spatialAtRisk...
spatialAtRisk.function spatialAtRisk...
spatialAtRisk.im spatialAtRisk...
spatialAtRisk.SpatialGridDataFrame spatialAtRisk...
spatialAtRisk.SpatialPolygonsDataFrame spatialAtRisk...
spatialIntensities spatialIntensities function...
spatialIntensities.fromSPDF spatialIntensities...
spatialIntensities.fromXYZ spatialIntensities...
spatialparsEst spatialparsEst function...
SpatialPolygonsDataFrame.stapp SpatialPolygonsDataFrame...
stapp stapp function...
stapp.list stapp...
stapp.SpatialPolygonsDataFrame stapp...
stppp stppp function...
stppp.list stppp...
stppp.ppp stppp...
summary.lgcpgrid summary...
summary.mcmc summary...

-- T --

target.and.grad target...
target.and.grad.spatial target...
target.and.grad.spatiotemporal target...
temporalAtRisk temporalAtRisk function...
temporalAtRisk.function temporalAtRisk...
temporalAtRisk.numeric temporalAtRisk...
thetaEst thetaEst function...
toral.cov.mat toral...
txtProgressBar2 txtProgressBar2

-- U --

updateAMCMC updateAMCMC function...
updateAMCMC.andrieuthomsh updateAMCMC...
updateAMCMC.constanth updateAMCMC...

-- V --

varfield varfield function...
varfield.lgcpPredict varfield...

-- W --

window.lgcpPredict window...
wpopdata Population of Welsh counties
wtowncoords Welsh town details: location
wtowns Welsh town details: population

-- X --

xvals xvals function...
xvals.default xvals...
xvals.fromXYZ xvals...
xvals.lgcpPredict xvals...
xvals.SpatialGridDataFrame xvals...

-- Y --

YfromGamma YfromGamma function...
yvals yvals function...
yvals.default yvals...
yvals.fromXYZ yvals...
yvals.lgcpPredict yvals...
yvals.SpatialGridDataFrame yvals...

-- Z --

zvals zvals function...
zvals.default zvals...
zvals.fromXYZ zvals...
zvals.SpatialGridDataFrame zvals...

-- misc --

"[.stppp" Extract...