Tools for Generating, Visualizing, and Analysing Link Communities in Networks


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Documentation for package ‘linkcomm’ version 1.0-4

Help Pages

linkcomm-package The 'linkcomm' package
corLinkcommCentrality Correlation of Community Centrality with Classic Centrality
cutDendrogramAt Extract Meta-Communities
getAllNestedComm Find Nested Communities
getClusterRelatedness Hierarchichal Clustering of Link Communities
getCommunityCentrality Calculate Community Centrality Measures for Nodes
getCommunityConnectedness Calculate Community Connectedness or Modularity
getCommunityMatrix Construct a Community Membership Matrix
getEdgesIn Extract Edge Indices from Communities
getLinkCommDensities Calculate Link Community Link Densities
getLinkCommunities Extract Link Communities from a Network
getNestedHierarchies Find Nested Structures in Communities
getNodesIn Extract Nodes from Communities
graph.feature Make Node or Edge Graph Features
karate Social Network in a Karate Club
layout.spencer.circle Calculate Node Coordinates for a Spencer Circle
lesmiserables Co-Appearance Network from Les Miserables
linkcomm The 'linkcomm' package
linkcomm2cytoscape Write an Edge Attribute File for Cytoscape
newLinkCommsAt User-Defined Link Communities
orderCommunities Order Link Communities According to the Dendrogram
plot.linkcomm The 'linkcomm' Plotting Function
plotLinkCommDend Plot a Coloured Dendrogram of Link Communities
plotLinkCommGraph Plot a Graph Layout of Link Communities
plotLinkCommMembers Plot a Community Membership Matrix for Link Communities
plotLinkCommSumm Plot a Summary of the Link Community Algorithm Output
plotLinkCommSummComm Plot a Summary of the Link Communities
pp_rnapol Sample Yeast Protein Interactome
print.linkcomm Print a Summary of a 'linkcomm' Object
weighted Sample Gene Co-Expression Network