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| nadiv-package | Functions to create non-additive relationship matrices and their inverses |
| aiFun | Sampling (co)variances and correlations |
| choose | Internal function for 'makeDsim' |
| constrainFun | Function used in the 'proLik' function to produce a profile likelihood for a variance component |
| DFC | Indicates Double First Cousins |
| findBetween | Determines how close estimates are to a true value |
| findDFC | Finds the double first cousins in a pedigree |
| genAssign | Generation assignment |
| IBD | Identical by descent |
| IBD2 | Identity by descent helper function |
| makeA | Creates the additive genetic relationship matrix |
| makeAA | Creates the additive by additive epistatic genetic relationship matrix |
| makeD | Creates the dominance genetic realationship matrix |
| makeDomEpi | Creates the additive by dominance and dominance by dominance epistatic genetic relationship matrices |
| makeDsim | Creates the dominance genetic relationship matrix through simulation |
| Mrode2 | Pedigree from Table 2.1 of Mrode (2005) |
| Mrode9 | Pedigree, adapted from example 9.1 of Mrode (2005) |
| nadiv | Functions to create non-additive relationship matrices and their inverses |
| numPed | Creates a numeric form of a pedigree |
| plot | Graphically depicts the profile Likelihood |
| plot.proLik | Graphically depicts the profile Likelihood |
| proLik | Estimates the profile likelihood of a random effect |
| SEfun | Estimate of the standard error for a simulated coefficient of fraternity |
| sm2list | Converts a sparse matrix into a three column format. |
| vchoose | Helper function for another internal function in 'makeDsim' |
| warcolak | Pedigree and phenotypic values for a mythical population of Warcolaks |