Rigorous - NIfTI+ANALYZE+AFNI Input / Output


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Documentation for package ‘oro.nifti’ version 0.3.1

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A C D E F G H I N O P Q R S T W X misc

-- A --

afni-class Class "afni"
anlz Constructor for Analyze
anlz-class Class "anlz"
as-method Force an Object to Belong to the ANALYZE or NIfTI Class
as.anlz as.nifti
as.nifti as.nifti
as<--method Force an Object to Belong to the ANALYZE or NIfTI Class
audit.trail Extract or Replace NIfTI Audit Trail
audit.trail-method Extract or Replace NIfTI Audit Trail
audit.trail-methods Extract or Replace NIfTI Audit Trail
audit.trail<- Extract or Replace NIfTI Audit Trail
audit.trail<--method Extract or Replace NIfTI Audit Trail
aux.file Extract or Replace NIfTI/Analyze Auxiliary File
aux.file-method Extract or Replace NIfTI/Analyze Auxiliary File
aux.file-methods Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<- Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<--method Extract or Replace NIfTI/Analyze Auxiliary File

-- C --

cal.max Extract or Replace NIfTI/Analyze Min or Max Values
cal.max-method Extract or Replace NIfTI/Analyze Min or Max Values
cal.max-methods Extract or Replace NIfTI/Analyze Min or Max Values
cal.max<- Extract or Replace NIfTI/Analyze Min or Max Values
cal.max<--method Extract or Replace NIfTI/Analyze Min or Max Values
cal.min Extract or Replace NIfTI/Analyze Min or Max Values
cal.min-method Extract or Replace NIfTI/Analyze Min or Max Values
cal.min-methods Extract or Replace NIfTI/Analyze Min or Max Values
cal.min<- Extract or Replace NIfTI/Analyze Min or Max Values
cal.min<--method Extract or Replace NIfTI/Analyze Min or Max Values
coerce-method Force an Object to Belong to the ANALYZE or NIfTI Class
coerce-methods Force an Object to Belong to the ANALYZE or NIfTI Class
coerce<--method Force an Object to Belong to the ANALYZE or NIfTI Class
convert.bitpix Convert NIfTI Codes
convert.bitpix.anlz Convert NIfTI Codes
convert.datatype Convert NIfTI Codes
convert.datatype.anlz Convert NIfTI Codes
convert.form Convert NIfTI Codes
convert.intent Convert NIfTI Codes
convert.orient.anlz Convert NIfTI Codes
convert.scene Convert AFNI data codes
convert.slice Convert NIfTI Codes
convert.units Convert NIfTI Codes

-- D --

descrip Extract or Replace NIfTI/Analyze Description
descrip-method Extract or Replace NIfTI/Analyze Description
descrip-methods Extract or Replace NIfTI/Analyze Description
descrip<- Extract or Replace NIfTI/Analyze Description
descrip<--method Extract or Replace NIfTI/Analyze Description
dim2freq Bitwise Conversion Subroutines
dim2phase Bitwise Conversion Subroutines
dim2slice Bitwise Conversion Subroutines

-- E --

enableAuditTrail Facilitate the Creation and Modification of Audit Trails

-- F --

fmri2oro Convert Between fmridata and oro.nifti Objects

-- G --

getLastCallWithName Facilitate the Creation and Modification of Audit Trails

-- H --

hotmetal Hot Metal Color Table

-- I --

image-method Methods for Function 'image'
image-methods Methods for Function 'image'
image.nifti Methods for Function 'image'
integerTranslation integerTranslation
inverseReorient reorient
invertIntegerTranslation integerTranslation
is.afni is.afni
is.anlz Constructor for Analyze
is.nifti Constructor for NIfTI

-- N --

newAuditTrail Facilitate the Creation and Modification of Audit Trails
nifti Constructor for NIfTI
nifti-class Class "nifti"
niftiAuditTrail-class Class "niftiAuditTrail"
niftiAuditTrailCreated Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNode Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNodeEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailToExtension Facilitate the Creation and Modification of Audit Trails
niftiExtension-class Class "niftiExtension"
niftiExtensionSection-class Class "niftiExtensionSection"
niftiExtensionToAuditTrail Facilitate the Creation and Modification of Audit Trails
NSLI Dimension Accessor Functions
nsli Dimension Accessor Functions
NTIM Dimension Accessor Functions
ntim Dimension Accessor Functions

-- O --

oro.nifti.info Facilitate the Creation and Modification of Audit Trails
oro2fmri Convert Between fmridata and oro.nifti Objects
orthographic Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic-method Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic-methods Methods for Function 'orthographic' in Package 'dcemriS4'
orthographic.nifti Methods for Function 'orthographic' in Package 'dcemriS4'
overlay Methods for Function overlay
overlay-method Methods for Function overlay
overlay-methods Methods for Function overlay
overlay.nifti Methods for Function overlay

-- P --

performPermutation performPermutation
pixdim Extract or Replace NIfTI/Analyze Pixel Dimensions
pixdim-method Extract or Replace NIfTI/Analyze Pixel Dimensions
pixdim-methods Extract or Replace NIfTI/Analyze Pixel Dimensions
pixdim<- Extract or Replace NIfTI/Analyze Pixel Dimensions
pixdim<--method Extract or Replace NIfTI/Analyze Pixel Dimensions

-- Q --

qform Extract NIfTI 3D Image Orientation
qform-method Extract NIfTI 3D Image Orientation
qform-methods Extract NIfTI 3D Image Orientation
quaternion2mat44 Convert Quaternion into a Rotation Matrix
quaternion2rotation Convert Quaternion into a Rotation Matrix

-- R --

readAFNI readAFNI
readANALYZE readANALYZE
readNIfTI readNIfTI
reorient reorient
rmgz Remove File Extensions Around the NIfTI/ANALYZE Formats
rmhdr Remove File Extensions Around the NIfTI/ANALYZE Formats
rmhdrgz Remove File Extensions Around the NIfTI/ANALYZE Formats
rmimg Remove File Extensions Around the NIfTI/ANALYZE Formats
rmimggz Remove File Extensions Around the NIfTI/ANALYZE Formats
rmnii Remove File Extensions Around the NIfTI/ANALYZE Formats
rmniigz Remove File Extensions Around the NIfTI/ANALYZE Formats

-- S --

sform Extract NIfTI 3D Image Orientation
sform-method Extract NIfTI 3D Image Orientation
sform-methods Extract NIfTI 3D Image Orientation
show-method Class "afni"
show-method Class "anlz"
show-method Class "nifti"
space.time2xyzt Bitwise Conversion Subroutines

-- T --

tim.colors Tim's Useful Color Table
translateCoordinate translateCoordinate

-- W --

writeAFNI writeAFNI
writeAFNI-method writeAFNI
writeAFNI-methods writeAFNI
writeANALYZE writeANALYZE
writeANALYZE-method writeANALYZE
writeANALYZE-methods writeANALYZE
writeNIfTI writeNIfTI
writeNIfTI-method writeNIfTI
writeNIfTI-methods writeNIfTI

-- X --

xyzt2space Bitwise Conversion Subroutines
xyzt2time Bitwise Conversion Subroutines

-- misc --

[<--method ~~ Methods for Function [<- in Package 'base' ~~
[<--methods ~~ Methods for Function [<- in Package 'base' ~~