paleotree-package | paleotree: Paleontological and Phylogenetic Analyses of Evolution |
binTimeData | Bin Temporal Ranges in Discrete Intervals |
bin_srcTimePaleoPhy | SampRate-Calibrated Timescaling of Paleo-Phylogenies |
bin_timePaleoPhy | Timescaling of Paleo-Phylogenies |
degradeTree | Randomly collapse nodes on a phylogeny |
depthRainbow | Paint Tree Branch Depth by Color |
dropExtant | Drop Terminal Branches of Various Types |
dropExtinct | Drop Terminal Branches of Various Types |
dropZLB | Drop Terminal Branches of Various Types |
expandTaxonTree | Extrapolating Lower Taxon Phylogenies from Higher Taxon Trees |
getSampProbDisc | Fit Models of Sampling Probability to Discrete-Interval Taxon Ranges |
getSampRateCont | Fit Models of Sampling Rates to Continuous-Time Taxon Ranges |
multiDiv | Calculating Diversity Curves Across Multiple Datasets |
paleotree | paleotree: Paleontological and Phylogenetic Analyses of Evolution |
phyloDiv | Diversity Curves |
plotMultiDiv | Calculating Diversity Curves Across Multiple Datasets |
plotTraitgram | Plot a Traitgram for Continuous Traits |
pqsRate2sProb | Converting Sampling Estimates |
probAnc | Converting Sampling Estimates |
qsProb2Comp | Converting Sampling Estimates |
qsRate2Comp | Converting Sampling Estimates |
sampleRanges | Sampling Taxon Ranges |
simFossilTaxa | Simulating Taxa in the Fossil Record |
simFossilTaxa_SRCond | Simulating Taxa in the Fossil Record |
simPaleoTrees | Simulating Un-Conditioned Trees of Fossil Taxa |
sProb2sRate | Converting Sampling Estimates |
sRate2sProb | Converting Sampling Estimates |
srcTimePaleoPhy | SampRate-Calibrated Timescaling of Paleo-Phylogenies |
taxa2cladogram | Converting taxon data into cladogram |
taxa2phylo | Convert taxon data into Phylogeny |
taxicDivCont | Diversity Curves |
taxicDivDisc | Diversity Curves |
timePaleoPhy | Timescaling of Paleo-Phylogenies |
timeSliceTree | Taking a Timeslice of a Tree |
unitLengthTree | Scale Tree to Unit-Length |