Fishery Stock Assessment by Catch Dynamic Models

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Documentation for package ‘CatDyn’ version 1.0-4

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CatDyn-package Fisheries Stock Assessment by Catch Dynamics Models
BioData Biological sampling data
BioFishpDay.Fk Process Biological Sampling and Fisheries Census Data FIFD-Style Databases
CatDyn Fisheries Stock Assessment by Catch Dynamics Models
catdyn Fit Catch Dynamic Models by Maximum Likelihood
CatDynData Generic CatDyn Data Plotting
CatDynMod Generic CatDyn Results Plot
CatEffData Catch and Effort Census Data
CDMN0P Implementing a Pure Depletion Catch Dynamics Model to Examine Parameter Values
CDMN0P.Lik Likelihood Evaluation of Pure Depletion Catch Dynamics Model
CDMN0P.Lik.gr Calculate Analytical Gradients for the Pure Depletion Model
CDMN1P Implementing a 1-Perturbation Catch Dynamics Model to Examine Parameter Values
CDMN1P.Lik Likelihood Evaluation of 1-Perturbation Catch Dynamics Model
CDMN1P.Lik.gr Calculate Analytical Gradients for the 1-Perturbation Model
CDMN2P Implementing a 2-Perturbations Catch Dynamics Model to Examine Parameter Values
CDMN2P.Lik Likelihood Evaluation of 2-Perturbations Catch Dynamics Model
CDMN2P.Lik.gr Calculate Analytical Gradients for the 2-Perturbations Model
CDMN3P Implementing a 3-Perturbations Catch Dynamics Model to Examine Parameter Values
CDMN3P.Lik Likelihood Evaluation of 3-Perturbations Catch Dynamics Model
CDMN3P.Lik.gr Calculate Analytical Gradients for the 3-Perturbations Model
CDMN4P Implementing a 4-Perturbations Catch Dynamics Model to Examine Parameter Values
CDMN4P.Lik Likelihood Evaluation of 4-Perturbations Catch Dynamics Model
CDMN4P.Lik.gr Calculate Analytical Gradients for the 4-Perturbations Model
MBWpDaypSam.Fk Mean Bodymass per Day and Sample
plot.CatDynData Exploratory analysis of catch and effort fisheries data on a graphical display
plot.CatDynMod Examining Model Predictions of Catch Dynamics Models on a Graphical Display
SeasonData.1990.S1.B Processed Data to Fit Catch Dynamics Models
SeasonDates Star and End Dates of Loligo Seasons in the Falkland Islands