adj2mat |
Convert adjacency list into an adjacency matrix. |
bootstrap |
Bootstrap the reconstruction of a network |
buildAracne |
Reconstruct network using Aracne |
buildGenenet |
Reconstruct network using GeneNet |
buildSpace |
Reconstruct network using SPACE |
buildWgcna |
Reconstruct network using WGCNA |
edgeCutoff |
Compute a binary network from a continuous rank-product network. |
ena |
Perform ensemble network aggregation |
getTableAddressing |
Get the adjacency list addressing template. |
mat2adj |
Convert a matrix to an adjacency list |
net1345 |
Sample network topology using 1345 genes with interactions based on observed protein-protein interaction networks. |
net17 |
Sample network topology using 17 genes with interactions based on observed protein-protein interaction networks. |
net231 |
Sample network topology using 231 genes with interactions based on observed protein-protein interaction networks. |
net44 |
Sample network topology using 44 genes with interactions based on observed protein-protein interaction networks. |
net613 |
Sample network topology using 613 genes with interactions based on observed protein-protein interaction networks. |
net83 |
Sample network topology using 83 genes with interactions based on observed protein-protein interaction networks. |
simulateNetwork |
Simulate a gene expression dataset. |
symmetricize |
Make a matrix symmetric |
tri2mat |
Convert triangular elements to full matrix. |