Multivariate Autoregressive State-Space Modeling


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Documentation for package ‘MARSS’ version 3.2

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MARSS-package Multivariate Autoregressive State-Space Model Estimation
alldefaults MARSS function defaults and allowed methods
allowed.methods MARSS function defaults and allowed methods
as.marssm Model Objects
checkMARSSInputs Check inputs to MARSS call
checkModelList Check model list passed into MARSS call
convert.model.mat Matrix Utilities
CSEGriskfigure Plot Extinction Risk Metrics
CSEGtmufigure Plot Forecast Uncertainty
describe.marssm MARSS function defaults and allowed methods
fixed.free.to.formula Matrix Utilities
graywhales Population Data Sets
grouse Population Data Sets
harborSeal Harbor Seal Population Count Data (Log counts)
harborSealnomiss Harbor Seal Population Count Data (Log counts)
harborSealWA Harbor Seal Population Count Data (Log counts)
Imat Matrix Utilities
is.blockdiag Matrix Utilities
is.blockequaltri Matrix Utilities
is.blockunconst Matrix Utilities
is.design Matrix Utilities
is.diagonal Matrix Utilities
is.equaltri Matrix Utilities
is.fixed Matrix Utilities
is.identity Matrix Utilities
is.marssm Model Objects
is.marssMLE Maximum Likelihood MARSS Estimation Object
is.solvable Matrix Utilities
is.wholenumber Matrix Utilities
isleRoyal Isle Royale Wolf and Moose Data
ivesDataByWeek Plankton Data Sets
ivesDataLP Plankton Data Sets
kem.methods MARSS function defaults and allowed methods
kestrel Population Data Sets
lakeWAplankton Plankton Data Sets
loggerhead Loggerhead Turtle Tracking Data
loggerheadNoisy Loggerhead Turtle Tracking Data
makediag Matrix Utilities
MARSS Interface MARSS Model Specification and Estimation
MARSS.dfa Multivariate Dynamic Factor Analysis
MARSS.marxss Multivariate AR-1 State-space Model with Inputs
MARSSaic AIC for MARSS models
MARSSapplynames Names for marssMLE Object Components
MARSSboot Bootstrap MARSS Parameter Estimates
MARSShatyt Compute Expected Value of Y,YY, and YX
MARSShessian MARSS Parameter Variance-Covariance Matrix from the Hessian Matrix
MARSSinfo Information for MARSS Error Messages and Warnings
MARSSinits Initial Values for MLE
MARSSinnovationsboot Bootstrapped Data using Stoffer and Wall's Algorithm
MARSSkem Maximum Likelihood Estimation for Multivariate Autoregressive State-Space Models
MARSSkemcheck Model Checking for MLE objects passed to MARSSkem
MARSSkf Kalman Filtering and Smoothing
MARSSkfas Kalman Filtering and Smoothing
marssm Model Objects
marssm-class Class "marssm"
MARSSmcinit Monte Carlo Initialization
marssMLE Maximum Likelihood MARSS Estimation Object
marssMLE-class Class "marssMLE"
MARSSoptim Parameter estimation for MARSS models using optim
MARSSparamCIs Confidence Intervals for MARSS Parameters
MARSSresids MARSS standardized residuals
MARSSsettings Interface MARSS Model Specification and Estimation
MARSSsimulate Simulate Data from a MARSS Model and Parameter Estimates
MARSSvectorizeparam Vector to Parameter Matrix Conversion
matrix.power Matrix Utilities
mystrsplit Matrix Utilities
neglogLik Parameter estimation for MARSS models using optim
okanaganRedds Population Data Sets
optim.methods MARSS function defaults and allowed methods
parmat Retrieve Parameter Matrix
pcholinv Matrix Utilities
pinv Matrix Utilities
prairiechicken Population Data Sets
print Printing function for MARSS MLE objects
print-method Class "marssMLE"
print-method Class "marssm"
print.MARSS Printing function for MARSS MLE objects
print.marssMLE Printing function for MARSS MLE objects
rockfish Population Data Sets
rwishart Matrix Utilities
stdInnov Standardized Innovations
sub3D Matrix Utilities
summary-method Class "marssMLE"
summary-method Class "marssm"
takediag Matrix Utilities
unvec Matrix Utilities
vec Matrix Utilities
wilddogs Population Data Sets