Shape Analysis of Outlines

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Documentation for package ‘Momocs’ version 0.1-03

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A B C D E H I L M N P R S T

Momocs-package Outline Analysis using R.

-- A --

align Class '"Coo"'
align-method Class '"Coo"'
align-methods Class '"Coo"'

-- B --

bot Bottles dataset
boxplot-method Class '"Nef"'
boxplot-methods Class '"Nef"'

-- C --

center Class '"Coo"'
center-method Class '"Coo"'
center-methods Class '"Coo"'
coeff.sel Selection of harmonic coefficients.
coeff.split Selection of harmonic coefficients.
col.bcol Some color palettes.
col.gallus Some color palettes.
col.india Some color palettes.
col.nb Some color palettes.
col.sari Some color palettes.
col.summer Some color palettes.
col.wcol Some color palettes.
Coo Class '"Coo"'
Coo-class Class '"Coo"'
coo.align Utilities to manipulate list and matrices of coordinates.
coo.amplify Dilation of shape based on elliptical Fourier decomposition.
coo.center Utilities to manipulate list and matrices of coordinates.
coo.close Utilities to manipulate list and matrices of coordinates.
coo.draw Plots sets of shapes.
coo.list.panel Plots sets of shapes.
coo.oscillo Momocs' "oscilloscope" for periodic functions.
coo.oscillo1 Momocs' "oscilloscope" for periodic functions.
coo.plot Plots sets of shapes.
coo.rotate Utilities to manipulate list and matrices of coordinates.
coo.sample Utilities to manipulate list and matrices of coordinates.
coo.sample.rr Utilities to manipulate list and matrices of coordinates.
coo.scale Utilities to manipulate list and matrices of coordinates.
coo.slide Utilities to manipulate list and matrices of coordinates.
coo.smooth Utilities to manipulate list and matrices of coordinates.
coo.template Utilities to manipulate list and matrices of coordinates.
coo.trans Utilities to manipulate list and matrices of coordinates.

-- D --

dev.plot Calculates and plots series with associated error bars.
dudi.plot A wrapper for 'dudi.pca' graphical functions.

-- E --

edm Pairwaise euclidean distance between two matrices/lists of coordinates.
ef.amplify Dilation of shape based on elliptical Fourier decomposition.
eFourier Methods for Function 'eFourier'
efourier Elliptical Fourier Analysis core functions.
eFourier-method Methods for Function 'eFourier'
eFourier-methods Methods for Function 'eFourier'
efourier.i Elliptical Fourier Analysis core functions.
efourier.norm Elliptical Fourier Analysis core functions.
efourier.shape Elliptical Fourier Analysis core functions.
ellipse.par Calculate ellipse parameters on a 'Nef'-class object.
ellipse.par-method Calculate ellipse parameters on a 'Nef'-class object.
ellipse.par-methods Calculate ellipse parameters on a 'Nef'-class object.
ellpar Calculate ellipse parameters.

-- H --

harm.contrib Calculate harmonic effect.
harm.contrib-method Calculate harmonic effect.
harm.contrib-methods Calculate harmonic effect.
harm.pow Calculate harmonic effect.
harm.pow-method Calculate harmonic effect.
harm.pow-methods Calculate harmonic effect.
harm.qual Calculate harmonic effect.
harm.qual-method Calculate harmonic effect.
harm.qual-methods Calculate harmonic effect.
harm.quant Calculate harmonic effect.
harm.quant-method Calculate harmonic effect.
harm.quant-methods Calculate harmonic effect.
hearts Hearts dataset
hist-method Class '"Nef"'
hist-methods Class '"Nef"'

-- I --

import.img.Conte Everything to convert images to a list of coordinates.
import.img.prepare Everything to convert images to a list of coordinates.
import.jpg Everything to convert images to a list of coordinates.
import.multi1.jpg Everything to convert images to a list of coordinates.
import.txt Everything to convert '.txt' files to a list of coordinates.

-- L --

l2a Utilities to manipulate list and matrices of coordinates.
l2m Utilities to manipulate list and matrices of coordinates.

-- M --

m2l Utilities to manipulate list and matrices of coordinates.
manova.nef Multivariate ANOVA on Nef objects
manova.nef-method Multivariate ANOVA on Nef objects
manova.nef-methods Multivariate ANOVA on Nef objects
Momocs Outline Analysis using R.

-- N --

Nef Class '"Nef"'
Nef-class Class '"Nef"'

-- P --

pca A wrapper for 'dudi.pca' on 'Nef'-objects.
pca-method A wrapper for 'dudi.pca' on 'Nef'-objects.
pca-methods A wrapper for 'dudi.pca' on 'Nef'-objects.
pca2shp From a factorial map to a shape.
plot-method Class '"Coo"'
plot-methods Class '"Coo"'
Ptolemy Methods for Function 'Ptolemy'
Ptolemy-method Methods for Function 'Ptolemy'
Ptolemy-methods Methods for Function 'Ptolemy'

-- R --

rfourier Fourier Radius variation core functions.
rfourier.i Fourier Radius variation core functions.
rfourier.shape Fourier Radius variation core functions.

-- S --

sample Class '"Coo"'
sample-method Class '"Coo"'
sample-methods Class '"Coo"'
scale Class '"Coo"'
scale-method Class '"Coo"'
scale-methods Class '"Coo"'
show-method Class '"Coo"'
show-method Class '"Nef"'
slide Class '"Coo"'
slide-method Class '"Coo"'
slide-methods Class '"Coo"'
smooth Class '"Coo"'
smooth-method Class '"Coo"'
smooth-methods Class '"Coo"'
smooth.qual Displays effect of smoothing on shape reconstruction.
smooth.qual-method Displays effect of smoothing on shape reconstruction.
smooth.qual-methods Displays effect of smoothing on shape reconstruction.

-- T --

tfourier Fourier Tangent angle core functions.
tfourier.i Fourier Tangent angle core functions.
tfourier.shape Fourier Tangent angle core functions.
tps Thin Plin Splines
tps-method Thin Plin Splines
tps-methods Thin Plin Splines