Circos 2D Track Plot


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Documentation for package ‘RCircos’ version 1.0.2

Help Pages

RCircos-package Circos-like Plot of Genomic Data
RCircos Circos-like Plot of Genomic Data
RCircos.Base.Plot.Positions Base Positions of Points for Circos Plot
RCircos.Chromosome.Ideogram Draw Chromosome Ideogram
RCircos.Connector Circos-like Connector Plot
RCircos.Cytoband.Data Chromosome Ideogram Data
RCircos.Data.Point Convert Genomic Position to Index of Circos Plot Position
RCircos.Gene.Label Circos-like Gene Label Plot
RCircos.Gene.Label.Data Sample Data for Gene Labels
RCircos.Get.Label.Locations Calculate New Position for Gene or Data Point Labels
RCircos.Get.Plot.Data Convert Genomic Data to Circos Plot Data
RCircos.Heatmap Circos-like Heamap Plot
RCircos.Heatmap.Data Sample Data for RCircos Heatmap Plot
RCircos.Histogram Circos-like Histogram Plot
RCircos.Histogram.Data Sample Data for Circos Histogram Plot
RCircos.Initialize.Parameters Initialize Graphics Parameters for Circos Plot
RCircos.Line.Data Sample Data for Circos Line Plot
RCircos.Line.Plot Circos-like Line Plot
RCircos.Link.Data Sample Data for Circos Link Plot
RCircos.Link.Line Draw A Circos Link Line
RCircos.Link.Plot ircos-like Link Line Plot
RCircos.List.Parameters Print out Graphic Parameters to Standard Output
RCircos.Mouse.Expr.Data Sample Data of Mouse Gene Expression
RCircos.Rat.Expr.Data Sample Data of Rat Gene Expression
RCircos.Reset.Ideogram.Position Reset Graphics Parameters Derived from Radius
RCircos.Scatter.Data Sample Data for Circos Scatter Plot
RCircos.ScatterPlot Circos-like Scatter Plot
RCircos.Tile.Data Sample Data for Circos Tile Plot
RCircos.Tile.Plot Circos-like Tile Plot
RCircos.Track.Outline Draw Outline of Data Plot Track
RCircos.Track.Positions Calculate Track Position For A Data Plot Track
RCircos.Validate.Genomic.Data Validate Input Genomic Data
UCSC.Baylor.3.4.Rat.cytoBandIdeogram Cytoband Information for Rat Chromosome Ideogram
UCSC.HG19.Human.CytoBandIdeogram Cytoband Information for Human Chromosome Ideogram
UCSC.Mouse.GRCm38.CytoBandIdeogram Cytoband Inforamtion for Mouse Chromosome Ideogram