Close_SSD | Close SNP set data file (SSD) |
Generate_SSD_SetID | Generate SNP set data file (SSD) |
Get_Genotypes_SSD | Get Genotype data from SSD file |
Get_Logistic_Weights | Get the logistic weight |
Get_Logistic_Weights_MAF | Get the logistic weight |
Get_RequiredSampleSize | Get the required sample size to achieve the given power |
Get_Resampling_Pvalue | Compute the resampling p-value |
Get_Resampling_Pvalue_1 | Compute the resampling p-value |
Open_SSD | Open SNP set data file (SSD) |
Power_Continuous | Power calculation, continuous traits |
Power_Continuous_R | Power calculation, continuous traits |
Power_Logistic | Power calculation, Dichotomous traits |
Power_Logistic_R | Power calculation, Dichotomous traits |
Read_Plink_FAM | Read a Plink FAM file |
Resampling_FWER | Return significant SNP sets after controlling family wise error rate (FWER) |
Resampling_FWER_1 | Return significant SNP sets after controlling family wise error rate (FWER) |
SKAT | SNP-set (Sequence) Kernel Association Test |
SKAT.example | Example data for SKAT |
SKAT.haplotypes | Haplotype dataset for power calculation. |
SKAT.SSD.All | SNP-set Kernel Association Test |
SKAT.SSD.OneSet | SNP-set (Sequence) Kernel Association Test |
SKAT.SSD.OneSet_SetIndex | SNP-set (Sequence) Kernel Association Test |
SKAT_Null_Model | Get parameters and residuals from the H0 model |
SKAT_Null_Model_MomentAdjust | Get parameters and residuals from the H0 model for small sample adjustment |
SSD_FILE_OPEN.FileName | Interval variables for SSD files |
SSD_FILE_OPEN.isOpen | Interval variables for SSD files |