Models of Soil Organic Matter Decomposition


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Documentation for package ‘SoilR’ version 1.0-3

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A C D F G H I M N O P R S T

SoilR-package Models of Soil Organic Matter Decomposition

-- A --

as.character-method TimeMap S4 class

-- C --

C14Atm $^14C$ fraction in per mille
C14Atm_NH $^14C$ fraction in per mille
correctnessOfModel correctnessOfModel
CourseExample_R14 An example data set for parameter estimation
creating Models An overview about available shortcuts for model construction

-- D --

DataC An example data set for parameter estimation
DataI An example data set for parameter estimation
DataR14 An example data set for parameter estimation
DecompositionOperator decomposition operator
DecompositionOperator-class decomposition operator
deSolve.lsoda.wrapper deSolve lsoda wrapper

-- F --

fT.Arrhenius Effects of temperature on decomposition rates according the Arrhenius equation
fT.Century1 Effects of temperature on decomposition rates according the the CENTURY model
fT.Century2 Effects of temperature on decomposition rates according the the CENTURY model
fT.Daycent1 Effects of temperature on decomposition rates according to the DAYCENT model
fT.Daycent2 Effects of temperature on decomposition rates according to the DAYCENT model
fT.Demeter effects of temperature on decomposition rates according to the DEMETER model
fT.KB Effects of temperature on decomposition rates according to a model proposed by M. Kirschbaum (1995)
fT.LandT Effects of temperature on decomposition rates according to a function proposed by Lloyd and Taylor (1994)
fT.linear Effects of temperature on decomposition rates according to a linear model
fT.Q10 Effects of temperature on decomposition rates according to a Q10 function
fT.RothC Effects of temperature on decomposition rates according to the functions included in the RothC model
fT.Standcarb effects of temperature on decomposition rates according to the StandCarb model
fW.Century Effects of moisture on decomposition rates according to the CENTURY model
fW.Daycent1 Effects of moisture on decomposition rates according to the DAYCENT model
fW.Daycent2 #Effects of moisture on decomposition rates according to the DAYCENT model
fW.Demeter Effects of moisture on decomposition rates according to the DEMETER model
fW.RothC Effects of moisture on decomposition rates according to the RothC model
fW.Standcarb Effects of moisture on decomposition rates according to the StandCarb model

-- G --

GeneralModel The most general costructor for class Model
GeneralModel_14 The most general costructor for class Model14
getAccumulatedRelease access to the C content of the pools
getAccumulatedRelease-method Model
getAccumulatedRelease14 access to the C content of the pools
getAccumulatedRelease14-method Model_14
getC access to the C content of the pools
getC-method Model
getC14 access to the C content of the pools
getC14-method Model_14
getFunctionDefinition getFunctionDefinition
getFunctionDefinition-method TimeMap S4 class
getMeanTransitTime access to the mean transit time
getMeanTransitTime-method decomposition operator
getReleaseFlux access to the C content of the pools
getReleaseFlux-method Model
getReleaseFlux14 access to the C content of the pools
getReleaseFlux14-method Model_14
getSoilC14Fraction access to the C content of the pools
getSoilC14Fraction-method Model_14
getTimeRange getTimeRange
getTimeRange-method TimeMap S4 class
getTimes access to the time values the model solution is sougth for
getTimes-method Model
getTotalC14CRatio access to the C release flux from the pools
getTotalC14CRatio-method Model_14
getTotalReleaseFluxC14CRatio access to the C release flux from the pools
getTotalReleaseFluxC14CRatio-method Model_14
getTransitTimeDistributionDensity access to the transit time distribution
getTransitTimeDistributionDensity-method decomposition operator

-- H --

HarvardForest14CO2 Soil 14CO2 efflux from Harvard Forest
HIV_R HIV R

-- I --

ICBMModel Implementation of the Introductory Carbon Balance Model (ICBM)
initialize-method decomposition operator
initialize-method decomposition operator
initialize-method Model
initialize-method Model_14
initialize-method TimeMap S4 class
InputFlux decomposition operator
InputFlux-class decomposition operator
is.negative is negative

-- M --

Model Model
Model-class Model
Models An overview about available shortcuts for model construction
Model_14 Model_14
Model_14-class Model_14

-- N --

NpYdot NpYdot

-- O --

OnepModel Implementation of a one pool model
OnepModel14 Implementation of a one-pool C14 model

-- P --

ParallelModel ParallelModel

-- R --

RespirationCoefficients RespirationCoefficients
RothCModel Implementation of the RothCModel

-- S --

SoilR Models of Soil Organic Matter Decomposition
SoilR.euler SoilR euler
solver solver

-- T --

ThreepFeedbackModel Implementation of a three pool model with feedback structure
ThreepFeedbackModel14 Implementation of a three-pool C14 model with feedback structure
ThreepParallelModel Implementation of a three pool model with parallel structure
ThreepParallelModel14 Implementation of a three-pool C14 model with parallel structure
ThreepSeriesModel Implementation of a three pool model with series structure
ThreepSeriesModel14 Implementation of a three-pool C14 model with series structure
TimeMap TimeMap S4 class
TimeMap-class TimeMap S4 class
TimeMap.from.Dataframe TimeMap from Dataframe
TimeMap.new TimeMap new
TwopFeedbackModel Implementation of a two pool model with feedback structure
TwopFeedbackModel14 Implementation of a two-pool C14 model with feedback structure
TwopParallelModel Implementation of a two pool model with parallel structure
TwopParallelModel14 Implementation of a two-pool C14 model with parallel structure
TwopSeriesModel Implementation of a two pool model with series structure
TwopSeriesModel14 Implementation of a two-pool C14 model with series structure