Mixture model approach to compare two samples of Tiling Array data

Documentation for package ‘TAHMMAnnot’ version 2.0

Bidim_Gaussian_Mixture	Mixture Model for tiling array analysis
Bidim_Gaussian_Mixture_allchr	Bidimensionnal Gaussian Mixture for a set of chromosomes defined by the user.
HMM	Hidden Markov Model for tiling array analysis
HMM_allchr	Hidden Markov Model for a set of chromosomes defined by the user.
HMM_Annot	Hidden Markov Model with annotation knowledge for tiling array analysis
HMM_Annot_allchr	Hidden Markov Model and annotation knowledge for a set of chromosomes defined by the user.
HMM_Annot_restart0	Hidden Markov Model with annotation knowledge for tiling array analysis
HMM_Annot_restart0_allchr	Hidden Markov Model and annotation knowledge for a set of chromosomes defined by the user.
Mixture_Annot	Gaussian Mixture Model with annotation knowledge for tiling array analysis
Mixture_Annot_allchr	Mixture Model and annotation knowledge for a set of chromosomes defined by the user.
Normalisation_ANOVA	ANOVA Normalization
normalisation_lowess	Lowess Normalization
Process_norm	Normalization procedure