Simulating trees under the birth-death model

Documentation for package ‘TreeSim’ version 1.7

TreeSim-package	TreeSim: Simulating phylogenetic trees
corsim	corsim: Simulating the missing speciation events in an incomplete phylogenies
getx	getx: Getting the vector of speciation times x from a phylogenetic tree
LTT.plot	LTT.plot: plots the lineages through time of a set of phylogenetic trees
LTT.plot.gen	LTT.plot.gen: calculates the number of lineages through time for each input tree, as well as the average number of lineages
sim.bd.age	sim.bd.age: Simulating birth-death trees of a fixed age
sim.bd.taxa	sim.bd.taxa: Simulating birth-death trees on a fixed number of extant taxa
sim.bd.taxa.age	sim.bd.taxa.age: Simulating birth-death trees with a given age on a fixed number of extant taxa
sim.bdsky.stt	sim.bdsky.stt: Simulating birth-death trees under a model where birth and death rates are changing in a piecewise fashion.
sim.bdtypes.stt.taxa	sim.bdtypes.stt.taxa: Simulating multitype birth-death trees with a fixed number of tips sampled through time.
sim.gsa.taxa	sim.gsa.taxa: Sampling trees on n tips from bigger trees
sim.rateshift.taxa	sim.rateshift.taxa: Simulating trees incorporating mass extinction events and rate shifts
TreeSim	TreeSim: Simulating phylogenetic trees