A Biomarker Validation Suit for predicting Survival using gene signature.


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Documentation for package ‘aBioMarVsuit’ version 1.0

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cvelasticnetcox The cvelasticnetcox Class
cvelasticnetcox-class The cvelasticnetcox Class
cvelasticnetcox-method The cvelasticnetcox Class
CVfordimMethods The CVfordimMethods Class
CVfordimMethods-class The CVfordimMethods Class
CVfordimMethods-method The CVfordimMethods Class
CVforDimPcaPls Cross validations for PCA and PLS based methods
CvForMajorityVotes Cross validation for majority votes
CVGbyG The CVGbyG Class
CVGbyG-class The CVGbyG Class
CVGbyG-method The CVGbyG Class
CVGeneSpecificCoxPh Cross validation for gene by gene Cox proportional hazard model
CVLassoElasticNetCoxPh Cross Validations for Lasso Elastic Net based predictive models
CVMV The CVMV Class
CVMV-class The CVMV Class
CVMV-method The CVMV Class
CVSeqInc The CVSeqInc Class
CVSeqInc-class The CVSeqInc Class
CVSeqInc-method The CVSeqInc Class
CVSeqIncreaseGenes Cross Valdiation for Top 'k1, k2,...,kn' genes
EstimHR Classification, survival fit and HR estimation
FurtherValidation The FurtherValidation Class
FurtherValidation-class The FurtherValidation Class
FurtherValidation-method The FurtherValidation Class
GeneOccurence Mostly selected genes by cross validated gene by gene analysis
GeneSpecific The GeneSpecific Class
GeneSpecific-class The GeneSpecific Class
GeneSpecific-method The GeneSpecific Class
GeneSpecificCoxPh Gene by gene Cox proportional hazard model
GenSynSurvData Generate Synthetic Survival Gene Expression Data
GridAnalysis Classification, survival fit and HR estimation
InnerCrossValELNet Inner and Outer Cross Validations
LassoElasticNetCoxPh Wapper function for glmnet
MajorityVotes Majority votes classification
NullDistHR Null Distribution of the Estimated HR
Permutation The Permutation Class
Permutation-class The Permutation Class
Permutation-method The Permutation Class
plot-method The CVGbyG Class
plot-method The CVMV Class
plot-method The CVSeqInc Class
plot-method The CVfordimMethods Class
plot-method The FurtherValidation Class
plot-method The GeneSpecific Class
plot-method The Permutation Class
plot-method The cvelasticnetcox Class
SeqIncreaseGenes Sequentially increase the number of top K genes to be used in the classifier
show-method The CVGbyG Class
show-method The CVMV Class
show-method The CVSeqInc Class
show-method The CVfordimMethods Class
show-method The FurtherValidation Class
show-method The GeneSpecific Class
show-method The Permutation Class
show-method The cvelasticnetcox Class
summary-method The CVGbyG Class
summary-method The CVSeqInc Class
summary-method The CVfordimMethods Class
summary-method The FurtherValidation Class
summary-method The GeneSpecific Class
summary-method The Permutation Class
summary-method The cvelasticnetcox Class
SurFitPcaClasif PCA and Survival and Classification Function
SurFitPlsClasif PLS and survival and classification function