Colocalisation tests of two genetic traits


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Documentation for package ‘coloc’ version 1.11

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coloc-package Colocalisation tests of two genetic traits
bf Functions to extract information from a 'coloc' or 'colocBayes' object
bf-method Functions to extract information from a 'coloc' or 'colocBayes' object
chisquare Functions to extract information from a 'coloc' or 'colocBayes' object
chisquare-method Functions to extract information from a 'coloc' or 'colocBayes' object
ci Functions to extract information from a 'coloc' or 'colocBayes' object
ci-method Functions to extract information from a 'coloc' or 'colocBayes' object
coloc-class Classes '"coloc"' and '"colocBayes"'
coloc.bma Wrapper to use colocalization testing within a Bayesian model averaging structure.
coloc.test Function to do colocalisation tests of two traits
colocBayes-class Classes '"coloc"' and '"colocBayes"'
colocPCs-class Class '"colocPCs"'
df Functions to extract information from a 'coloc' or 'colocBayes' object
df-method Functions to extract information from a 'coloc' or 'colocBayes' object
eta Functions to extract information from a 'coloc' or 'colocBayes' object
eta-method Functions to extract information from a 'coloc' or 'colocBayes' object
fillin Impute missing genotypes
p.value Functions to extract information from a 'coloc' or 'colocBayes' object
p.value-method Functions to extract information from a 'coloc' or 'colocBayes' object
pcs.model Functions to prepare principle component models for colocalisation testing
pcs.prepare Functions to prepare principle component models for colocalisation testing
plot-method Functions to extract information from a 'coloc' or 'colocBayes' object
ppp.value Functions to extract information from a 'coloc' or 'colocBayes' object
ppp.value-method Functions to extract information from a 'coloc' or 'colocBayes' object
show-method Functions to extract information from a 'coloc' or 'colocBayes' object
theta Functions to extract information from a 'coloc' or 'colocBayes' object
theta-method Functions to extract information from a 'coloc' or 'colocBayes' object