Tools for Generating, Visualizing, and Analysing Link Communities in Networks


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Documentation for package ‘linkcomm’ version 1.0-6

Help Pages

linkcomm-package The 'linkcomm' package
corLinkcommCentrality Correlation of Community Centrality with Classic Centrality
cutDendrogramAt Extract Meta-Communities
edge.duplicates Find and Remove Edge Loops and Duplicates
getAllNestedComm Find Nested Communities
getClusterRelatedness Hierarchichal Clustering of Link Communities
getCommunityCentrality Calculate Community Centrality Measures for Nodes
getCommunityConnectedness Calculate Community Connectedness or Modularity
getCommunityMatrix Construct a Community Membership Matrix
getEdgesIn Extract Edge Indices from Communities
getLinkCommDensities Calculate Link Community Link Densities
getLinkCommunities Extract Link Communities from a Network
getNestedHierarchies Find Nested Structures in Communities
getNodesIn Extract Nodes from Communities
getOCG.clusters Generate Overlapping Cluster Generator (OCG) Communities
graph.feature Make Node or Edge Graph Features
human_pp Sample Human Protein Interactome
karate Social Network in a Karate Club
layout.spencer.circle Calculate Node Coordinates for a Spencer Circle
lesmiserables Co-Appearance Network from Les Miserables
linkcomm The 'linkcomm' package
linkcomm2cytoscape Write an Edge Attribute File for Cytoscape
newLinkCommsAt User-Defined Link Communities
numberEdgesIn Extract Node Community Membership by Edges
orderCommunities Order Link Communities According to the Dendrogram
plot.linkcomm The 'linkcomm' Plotting Function
plot.OCG The 'OCG' Plotting Function
plotLinkCommDend Plot a Coloured Dendrogram of Link Communities
plotLinkCommGraph Plot a Graph Layout of Link Communities
plotLinkCommMembers Plot a Community Membership Matrix for Link Communities
plotLinkCommSumm Plot a Summary of the Link Community Algorithm Output
plotLinkCommSummComm Plot a Summary of the Link Communities
plotOCGraph Plot a Graph Layout of OCG Communities
pp_rnapol Sample Yeast Protein Interactome
print.linkcomm Print a Summary of a 'linkcomm' Object
print.OCG Print a Summary of an 'OCG' Object
read.OCG Read an OCG Partition File into R
weighted Sample Gene Co-Expression Network
which.communities Extract Community Membership for Nodes