Paleontological and Phylogenetic Analyses of Evolution


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Documentation for package ‘paleotree’ version 1.2

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paleotree-package paleotree: Paleontological and Phylogenetic Analyses of Evolution
binTimeData Bin Temporal Ranges in Discrete Intervals
bin_srcTimePaleoPhy SampRate-Calibrated Timescaling of Paleo-Phylogenies
bin_timePaleoPhy Timescaling of Paleo-Phylogenies
degradeTree Randomly collapse nodes on a phylogeny
depthRainbow Paint Tree Branch Depth by Color
dropExtant Drop Terminal Branches of Various Types
dropExtinct Drop Terminal Branches of Various Types
dropZLB Drop Terminal Branches of Various Types
expandTaxonTree Extrapolating Lower Taxon Phylogenies from Higher Taxon Trees
getSampProbDisc Fit Models of Sampling Probability to Discrete-Interval Taxon Ranges
getSampRateCont Fit Models of Sampling Rates to Continuous-Time Taxon Ranges
multiDiv Calculating Diversity Curves Across Multiple Datasets
paleotree paleotree: Paleontological and Phylogenetic Analyses of Evolution
phyloDiv Diversity Curves
plotMultiDiv Calculating Diversity Curves Across Multiple Datasets
plotTraitgram Plot a Traitgram for Continuous Traits
pqsRate2sProb Converting Sampling Estimates
probAnc Converting Sampling Estimates
qsProb2Comp Converting Sampling Estimates
qsRate2Comp Converting Sampling Estimates
sampleRanges Sampling Taxon Ranges
simFossilTaxa Simulating Taxa in the Fossil Record
simFossilTaxa_SRCond Simulating Taxa in the Fossil Record
simPaleoTrees Simulating Un-Conditioned Trees of Fossil Taxa
sProb2sRate Converting Sampling Estimates
sRate2sProb Converting Sampling Estimates
srcTimePaleoPhy SampRate-Calibrated Timescaling of Paleo-Phylogenies
taxa2cladogram Converting taxon data into cladogram
taxa2phylo Convert taxon data into Phylogeny
taxicDivCont Diversity Curves
taxicDivDisc Diversity Curves
timePaleoPhy Timescaling of Paleo-Phylogenies
timeSliceTree Taking a Timeslice of a Tree
unitLengthTree Scale Tree to Unit-Length