beta.special |
Compute set of intervention effects |
beta.special.pcObj |
Compute set of intervention effects in a fast way |
binCItest |
Test for (conditional) independence for binary data |
causalEffect |
Estimate Multiset of Possible Total Causal Effects |
compareGraphs |
Compare two graphs in terms of TPR, FPR and TDR |
condIndFisherZ |
Conditional Independence by Fisher's Z-Transformation |
corGraph |
Computing the correlation graph |
dag2cpdag |
Convert a DAG to a CPDAG |
disCItest |
Test for (conditional) independence for discrete data |
dsep |
Test for d-separation in a DAG |
dsepTest |
Test for d-separation in a DAG |
fci |
Estimate the equivalence class of a MAG (PAG) using the FCI Algorithm |
fciAlgo-class |
Class "fciAlgo" |
gaussCItest |
Test for (conditional) independence for gaussian data |
getNextSet |
Iteration through a list of all combinations of choose(n,k) |
gmB |
Graphical Model 5-Dim Binary Example Data |
gmD |
Graphical Model Discrete 5-Dim Example Data |
gmG |
Graphical Model 8-Dimensional Gaussian Example Data |
gmI |
Graphical Model IDA Data Example |
gmL |
Latent Variable Graphical Model Data Example |
gSquareBin |
G square Test for (Conditional) Independence of Binary Data |
gSquareDis |
G square Test for (Conditional) Independence of Discrete Data |
ida |
Estimate Multiset of Possible Total Causal Effects |
idaFast |
Multiset of Possible Total Causal Effects for Several Target Var.s |
mcor |
Compute (Large) Correlation Matrix |
pc |
Estimate the equivalence class of a DAG using the PC algorithm |
pc.cons.intern |
Internal function for conservative PC algorithm |
pcAlgo |
PC-Algorithm: Estimate the Underlying Graph (Skeleton) or Equivalence Class (CPDAG) of a DAG |
pcAlgo-class |
Class "pcAlgo" |
pcorOrder |
Compute Partial Correlations |
pcSelect |
PC-Select: Estimate subgraph around a response variable |
pcSelect.presel |
Estimate Subgraph around a Response Variable using Preselection |
pdag2dag |
Extend a Partially Directed Acyclic Graph (PDAG) to a DAG |
pdsep |
Compute Possible-D-Sep for Each Node and Adapt Graph Accordingly |
plot-method |
Class "fciAlgo" |
plot-method |
Class "pcAlgo" |
plotAG |
Plot partial ancestral graphs (PAG) |
plotSG |
Plot the subgraph around a Specific Node in a Graph Object |
qreach |
Compute possible d-sep of node x |
randomDAG |
Generate a Directed Acyclic Graph (DAG) randomly |
rfci |
Estimate the equivalence class of a MAG (PAG) using the RFCI Algorithm |
rmvDAG |
Generate Multivariate Data according to a DAG |
shd |
Compute Structural Hamming Distance (SHD) |
show-method |
Class "fciAlgo" |
show-method |
Class "pcAlgo" |
skeleton |
Estimate the skeleton of a DAG using the PC Algorithm |
summary-method |
Class "fciAlgo" |
summary-method |
Class "pcAlgo" |
udag2pag |
Extend a pcAlgo-object containing a skeleton to a PAG |
udag2pdag |
Extend a pcAlgo-object containing a skeleton to a PDAG |
udag2pdagRelaxed |
Extend a pcAlgo-object containing a skeleton to a PDAG |
udag2pdagSpecial |
Extend a pcAlgo-object containing a skeleton to a PDAG using different methods if problems occur |
zStat |
Conditional Independence by Fisher's Z-Transformation |